Mon 29 Oct 02:09:11 GMT 2018: starting 00968: build of barrnap version 0.9+dfsg-1 arch armhf on mustang4 Running apt-get -q --download-only --only-source source barrnap=0.9+dfsg-1 Reading package lists... NOTICE: 'barrnap' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/barrnap.git Please use: git clone https://salsa.debian.org/med-team/barrnap.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 5,791 kB of source archives. Get:1 http://mirror/debian unstable/main barrnap 0.9+dfsg-1 (dsc) [1,999 B] Get:2 http://mirror/debian unstable/main barrnap 0.9+dfsg-1 (tar) [5,784 kB] Get:3 http://mirror/debian unstable/main barrnap 0.9+dfsg-1 (diff) [5,520 B] Fetched 5,791 kB in 0s (32.8 MB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'barrnap_0.9+dfsg-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) total 5664 -rw-r--r-- 1 root root 5520 May 7 16:54 barrnap_0.9+dfsg-1.debian.tar.xz -rw-r--r-- 1 root root 1999 May 7 16:54 barrnap_0.9+dfsg-1.dsc -rw-r--r-- 1 root root 5783936 May 7 16:54 barrnap_0.9+dfsg.orig.tar.xz sbuild (Debian sbuild) 0.77.1 (10 September 2018) on mustang4 +==============================================================================+ | barrnap 0.9+dfsg-1 (armhf) Mon, 29 Oct 2018 02:09:12 +0000 | +==============================================================================+ Package: barrnap Version: 0.9+dfsg-1 Source Version: 0.9+dfsg-1 Distribution: sid Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: binary I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-armhf-sbuild-506bb399-7c7a-4053-b016-1ca9a668aed3' with '<>' I: NOTICE: Log filtering will replace 'build/barrnap-Q1rU1Z/resolver-lg5Dkt' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian sid InRelease [233 kB] Ign:2 http://mirror.einval.org/debian sid/main armhf Packages.diff/Index Get:2 http://mirror.einval.org/debian sid/main armhf Packages.diff/Index [27.9 kB] Ign:2 http://mirror.einval.org/debian sid/main armhf Packages.diff/Index Get:3 http://mirror.einval.org/debian sid/main armhf Packages [7996 kB] Fetched 8229 kB in 3s (3012 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libgpg-error-l10n Use 'apt autoremove' to remove it. The following packages will be upgraded: libgcrypt20 libgdbm-compat4 libgdbm6 tzdata 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 860 kB of archives. After this operation, 21.5 kB disk space will be freed. Get:1 http://mirror.einval.org/debian sid/main armhf libgcrypt20 armhf 1.8.4-3 [501 kB] Get:2 http://mirror.einval.org/debian sid/main armhf tzdata all 2018g-1 [255 kB] Get:3 http://mirror.einval.org/debian sid/main armhf libgdbm6 armhf 1.18.1-1 [61.1 kB] Get:4 http://mirror.einval.org/debian sid/main armhf libgdbm-compat4 armhf 1.18.1-1 [43.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 860 kB in 0s (10.9 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11503 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.8.4-3_armhf.deb ... Unpacking libgcrypt20:armhf (1.8.4-3) over (1.8.3-1) ... Setting up libgcrypt20:armhf (1.8.4-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11503 files and directories currently installed.) Preparing to unpack .../tzdata_2018g-1_all.deb ... Unpacking tzdata (2018g-1) over (2018f-1) ... Preparing to unpack .../libgdbm6_1.18.1-1_armhf.deb ... Unpacking libgdbm6:armhf (1.18.1-1) over (1.18-2) ... Preparing to unpack .../libgdbm-compat4_1.18.1-1_armhf.deb ... Unpacking libgdbm-compat4:armhf (1.18.1-1) over (1.18-2) ... Setting up tzdata (2018g-1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Oct 29 02:09:33 UTC 2018. Universal Time is now: Mon Oct 29 02:09:33 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgdbm6:armhf (1.18.1-1) ... Processing triggers for libc-bin (2.27-6) ... Setting up libgdbm-compat4:armhf (1.18.1-1) ... Processing triggers for libc-bin (2.27-6) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /chroot/rebuildd/build-barrnap/barrnap_0.9+dfsg-1.dsc exists in /chroot/rebuildd/build-barrnap; copying to chroot I: NOTICE: Log filtering will replace 'build/barrnap-Q1rU1Z/barrnap-0.9+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/barrnap-Q1rU1Z' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11), hmmer (>= 3.1), lua5.1, bedtools, build-essential, fakeroot Filtered Build-Depends: debhelper (>= 11), hmmer (>= 3.1), lua5.1, bedtools, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-main-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [384 B] Get:5 copy:/<>/apt_archive ./ Packages [468 B] Fetched 1809 B in 0s (105 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: sbuild-build-depends-main-dummy : Depends: hmmer (>= 3.1) but it is not installable E: Unable to correct problems, you have held broken packages. apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use Setup apt archive ----------------- Merged Build-Depends: dose-distcheck Filtered Build-Depends: dose-distcheck dpkg-deb: building package 'sbuild-build-depends-dose3-dummy' in '/<>/apt_archive/sbuild-build-depends-dose3-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-dose3-dummy sbuild-build-depends-main-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [512 B] Get:5 copy:/<>/apt_archive ./ Packages [594 B] Fetched 2069 B in 0s (118 kB/s) Reading package lists... Reading package lists... Install dose3 build dependencies (apt-based resolver) ----------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libgpg-error-l10n Use 'apt autoremove' to remove it. The following additional packages will be installed: dose-distcheck libcap2 libelf1 liblua5.2-0 libnspr4 libnss3 libpopt0 librpm8 librpmio8 libsqlite3-0 Recommended packages: rpm-common The following NEW packages will be installed: dose-distcheck libcap2 libelf1 liblua5.2-0 libnspr4 libnss3 libpopt0 librpm8 librpmio8 libsqlite3-0 sbuild-build-depends-dose3-dummy 0 upgraded, 11 newly installed, 0 to remove and 0 not upgraded. Need to get 5613 kB of archives. After this operation, 10.5 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-dose3-dummy 0.invalid.0 [844 B] Get:2 http://mirror.einval.org/debian sid/main armhf libcap2 armhf 1:2.25-1.2 [15.9 kB] Get:3 http://mirror.einval.org/debian sid/main armhf liblua5.2-0 armhf 5.2.4-1.1+b2 [86.3 kB] Get:4 http://mirror.einval.org/debian sid/main armhf libpopt0 armhf 1.16-11 [46.0 kB] Get:5 http://mirror.einval.org/debian sid/main armhf libelf1 armhf 0.170-0.5 [160 kB] Get:6 http://mirror.einval.org/debian sid/main armhf libnspr4 armhf 2:4.20-1 [90.0 kB] Get:7 http://mirror.einval.org/debian sid/main armhf libsqlite3-0 armhf 3.25.2-1 [553 kB] Get:8 http://mirror.einval.org/debian sid/main armhf libnss3 armhf 2:3.39-1 [963 kB] Get:9 http://mirror.einval.org/debian sid/main armhf librpmio8 armhf 4.14.2+dfsg1-1 [1366 kB] Get:10 http://mirror.einval.org/debian sid/main armhf librpm8 armhf 4.14.2+dfsg1-1 [1451 kB] Get:11 http://mirror.einval.org/debian sid/main armhf dose-distcheck armhf 5.0.1-11+b1 [881 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5613 kB in 0s (45.4 MB/s) Selecting previously unselected package libcap2:armhf. (Reading database ... 11503 files and directories currently installed.) Preparing to unpack .../00-libcap2_1%3a2.25-1.2_armhf.deb ... Unpacking libcap2:armhf (1:2.25-1.2) ... Selecting previously unselected package liblua5.2-0:armhf. Preparing to unpack .../01-liblua5.2-0_5.2.4-1.1+b2_armhf.deb ... Unpacking liblua5.2-0:armhf (5.2.4-1.1+b2) ... Selecting previously unselected package libpopt0:armhf. Preparing to unpack .../02-libpopt0_1.16-11_armhf.deb ... Unpacking libpopt0:armhf (1.16-11) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../03-libelf1_0.170-0.5_armhf.deb ... Unpacking libelf1:armhf (0.170-0.5) ... Selecting previously unselected package libnspr4:armhf. Preparing to unpack .../04-libnspr4_2%3a4.20-1_armhf.deb ... Unpacking libnspr4:armhf (2:4.20-1) ... Selecting previously unselected package libsqlite3-0:armhf. Preparing to unpack .../05-libsqlite3-0_3.25.2-1_armhf.deb ... Unpacking libsqlite3-0:armhf (3.25.2-1) ... Selecting previously unselected package libnss3:armhf. Preparing to unpack .../06-libnss3_2%3a3.39-1_armhf.deb ... Unpacking libnss3:armhf (2:3.39-1) ... Selecting previously unselected package librpmio8. Preparing to unpack .../07-librpmio8_4.14.2+dfsg1-1_armhf.deb ... Unpacking librpmio8 (4.14.2+dfsg1-1) ... Selecting previously unselected package librpm8. Preparing to unpack .../08-librpm8_4.14.2+dfsg1-1_armhf.deb ... Unpacking librpm8 (4.14.2+dfsg1-1) ... Selecting previously unselected package dose-distcheck. Preparing to unpack .../09-dose-distcheck_5.0.1-11+b1_armhf.deb ... Unpacking dose-distcheck (5.0.1-11+b1) ... Selecting previously unselected package sbuild-build-depends-dose3-dummy. Preparing to unpack .../10-sbuild-build-depends-dose3-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-dose3-dummy (0.invalid.0) ... Setting up libpopt0:armhf (1.16-11) ... Setting up libelf1:armhf (0.170-0.5) ... Setting up libcap2:armhf (1:2.25-1.2) ... Setting up libnspr4:armhf (2:4.20-1) ... Processing triggers for libc-bin (2.27-6) ... Setting up libsqlite3-0:armhf (3.25.2-1) ... Setting up liblua5.2-0:armhf (5.2.4-1.1+b2) ... Setting up libnss3:armhf (2:3.39-1) ... Setting up librpmio8 (4.14.2+dfsg1-1) ... Setting up librpm8 (4.14.2+dfsg1-1) ... Setting up dose-distcheck (5.0.1-11+b1) ... Setting up sbuild-build-depends-dose3-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-6) ... (I)StdLoaders: Parsing and normalizing... (I)Packages: Parsing Packages file -... (I)Format822: total packages 57587 (I)Distcheck: Cudf Universe: 57587 packages (I)Distcheck: --checkonly specified, consider all packages as background packages (I)Distcheck: Solving... output-version: 1.2 native-architecture: armhf report: - package: sbuild-build-depends-main-dummy version: 0.invalid.0 architecture: armhf status: broken reasons: - missing: pkg: package: sbuild-build-depends-main-dummy version: 0.invalid.0 architecture: armhf unsat-dependency: hmmer:armhf (>= 3.1) background-packages: 57586 foreground-packages: 1 total-packages: 57587 broken-packages: 1 +------------------------------------------------------------------------------+ | Post Failed Build Commands | +------------------------------------------------------------------------------+ schroot -d / -c sid-armhf-sbuild-506bb399-7c7a-4053-b016-1ca9a668aed3 --run-session -q -u root -p -- sh -c "cd /<> && find . -type f -name core | xargs tar cf - " | cat > /chroot/rebuildd/build-barrnap/barrnap_0.9+dfsg-1.dsc-core.tar; if [ ! -s /chroot/rebuildd/build-barrnap/barrnap_0.9+dfsg-1.dsc-core.tar ]; then rm -f /chroot/rebuildd/build-barrnap/barrnap_0.9+dfsg-1.dsc-core.tar; else gzip -9 /chroot/rebuildd/build-barrnap/barrnap_0.9+dfsg-1.dsc-core.tar; fi --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tar: Cowardly refusing to create an empty archive Try 'tar --help' or 'tar --usage' for more information. I: Finished running 'schroot -d / -c sid-armhf-sbuild-506bb399-7c7a-4053-b016-1ca9a668aed3 --run-session -q -u root -p -- sh -c "cd /<> && find . -type f -name core | xargs tar cf - " | cat > /chroot/rebuildd/build-barrnap/barrnap_0.9+dfsg-1.dsc-core.tar; if [ ! -s /chroot/rebuildd/build-barrnap/barrnap_0.9+dfsg-1.dsc-core.tar ]; then rm -f /chroot/rebuildd/build-barrnap/barrnap_0.9+dfsg-1.dsc-core.tar; else gzip -9 /chroot/rebuildd/build-barrnap/barrnap_0.9+dfsg-1.dsc-core.tar; fi'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Post Failed Build Commands | +------------------------------------------------------------------------------+ schroot -d / -c sid-armhf-sbuild-506bb399-7c7a-4053-b016-1ca9a668aed3 --run-session -q -u root -p -- sh -c "cd /<> && find . -type f -name core | xargs tar cf - " | cat > /chroot/rebuildd/build-barrnap/barrnap_0.9+dfsg-1.dsc-core.tar; if [ ! -s /chroot/rebuildd/build-barrnap/barrnap_0.9+dfsg-1.dsc-core.tar ]; then rm -f /chroot/rebuildd/build-barrnap/barrnap_0.9+dfsg-1.dsc-core.tar; else gzip -9 /chroot/rebuildd/build-barrnap/barrnap_0.9+dfsg-1.dsc-core.tar; fi --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tar: Cowardly refusing to create an empty archive Try 'tar --help' or 'tar --usage' for more information. I: Finished running 'schroot -d / -c sid-armhf-sbuild-506bb399-7c7a-4053-b016-1ca9a668aed3 --run-session -q -u root -p -- sh -c "cd /<> && find . -type f -name core | xargs tar cf - " | cat > /chroot/rebuildd/build-barrnap/barrnap_0.9+dfsg-1.dsc-core.tar; if [ ! -s /chroot/rebuildd/build-barrnap/barrnap_0.9+dfsg-1.dsc-core.tar ]; then rm -f /chroot/rebuildd/build-barrnap/barrnap_0.9+dfsg-1.dsc-core.tar; else gzip -9 /chroot/rebuildd/build-barrnap/barrnap_0.9+dfsg-1.dsc-core.tar; fi'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Package build dependencies not satisfied; skipping +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: binary Build-Space: n/a Build-Time: 0 Distribution: sid Fail-Stage: install-deps Host Architecture: armhf Install-Time: 0 Job: /chroot/rebuildd/build-barrnap/barrnap_0.9+dfsg-1.dsc Machine Architecture: arm64 Package: barrnap Package-Time: 0 Source-Version: 0.9+dfsg-1 Space: n/a Status: given-back Version: 0.9+dfsg-1 -------------------------------------------------------------------------------- Finished at 2018-10-29T02:09:12Z Build needed 00:00:00, no disk space E: Package build dependencies not satisfied; skipping