Mon 10 Sep 02:11:04 BST 2018: starting build of seqmagick version 0.7.0-1 arch armel on pein Running apt-get -q --download-only --only-source source seqmagick=0.7.0-1 Reading package lists... NOTICE: 'seqmagick' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/seqmagick.git Please use: git clone https://salsa.debian.org/med-team/seqmagick.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 673 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main seqmagick 0.7.0-1 (dsc) [2,020 B] Get:2 http://mirror.einval.org/debian unstable/main seqmagick 0.7.0-1 (tar) [668 kB] Get:3 http://mirror.einval.org/debian unstable/main seqmagick 0.7.0-1 (diff) [3,236 B] Fetched 673 kB in 0s (9,834 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'seqmagick_0.7.0-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) total 660 -rw-r--r-- 1 root root 3236 May 31 06:26 seqmagick_0.7.0-1.debian.tar.xz -rw-r--r-- 1 root root 2020 May 31 06:26 seqmagick_0.7.0-1.dsc -rw-r--r-- 1 root root 667644 May 31 06:26 seqmagick_0.7.0.orig.tar.gz W: /root/.pbuilderrc does not exist I: pbuilder: network access will be disabled during build I: Current time: Mon Sep 10 02:11:05 BST 2018 I: pbuilder-time-stamp: 1536541865 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-armel.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: Mounting /dev I: Mounting /dev/pts I: Mounting /proc I: Mounting /sys I: policy-rc.d already exists I: Obtaining the cached apt archive contents I: Copying source file I: copying [seqmagick_0.7.0-1.dsc] I: copying [./seqmagick_0.7.0.orig.tar.gz] I: copying [./seqmagick_0.7.0-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu May 31 05:17:59 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./seqmagick_0.7.0-1.dsc dpkg-source: info: extracting seqmagick in seqmagick-0.7.0 dpkg-source: info: unpacking seqmagick_0.7.0.orig.tar.gz dpkg-source: info: unpacking seqmagick_0.7.0-1.debian.tar.xz dpkg-source: info: applying biopython_1.71_dual_coding_support.patch I: using fakeroot in build. I: Installing the build-deps I: user script /chroot/rebuildd/pbuilder/6058/tmp/hooks/D01update starting Get:1 http://mirror.einval.org/debian sid InRelease [233 kB] Ign:2 http://mirror.einval.org/debian sid/main armel Packages.diff/Index Get:2 http://mirror.einval.org/debian sid/main armel Packages.diff/Index [27.9 kB] Ign:2 http://mirror.einval.org/debian sid/main armel Packages.diff/Index Get:3 http://mirror.einval.org/debian sid/main armel Packages [7925 kB] Fetched 8158 kB in 6s (1312 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libncurses6 libprocps7 lsb-base Recommended packages: libgpm2 psmisc The following NEW packages will be installed: libncurses6 libprocps7 lsb-base procps debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 4 newly installed, 0 to remove and 43 not upgraded. Need to get 0 B/415 kB of archives. After this operation, 1113 kB of additional disk space will be used. Selecting previously unselected package libncurses6:armel. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11698 files and directories currently installed.) Preparing to unpack .../libncurses6_6.1+20180714-1_armel.deb ... Unpacking libncurses6:armel (6.1+20180714-1) ... Selecting previously unselected package libprocps7:armel. Preparing to unpack .../libprocps7_2%3a3.3.15-2_armel.deb ... Unpacking libprocps7:armel (2:3.3.15-2) ... Selecting previously unselected package lsb-base. Preparing to unpack .../lsb-base_9.20170808_all.deb ... Unpacking lsb-base (9.20170808) ... Selecting previously unselected package procps. Preparing to unpack .../procps_2%3a3.3.15-2_armel.deb ... Unpacking procps (2:3.3.15-2) ... Setting up libprocps7:armel (2:3.3.15-2) ... Setting up lsb-base (9.20170808) ... Processing triggers for libc-bin (2.27-5) ... Setting up libncurses6:armel (6.1+20180714-1) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Processing triggers for libc-bin (2.27-5) ... I: user script /chroot/rebuildd/pbuilder/6058/tmp/hooks/D01update finished W: skipping an editor backup file /chroot/rebuildd/pbuilder/6058/tmp/hooks/D01update~ I: user script /chroot/rebuildd/pbuilder/6058/tmp/hooks/D02enable_swp starting I: user script /chroot/rebuildd/pbuilder/6058/tmp/hooks/D02enable_swp finished W: skipping an editor backup file /chroot/rebuildd/pbuilder/6058/tmp/hooks/D02enable_swp~ -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armel Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), dh-python, python3-all, python3-setuptools, python3-nose, python3-biopython dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 11783 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-nose; however: Package python3-nose is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbsd0{a} libcroco3{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfreetype6{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libicu-le-hb0{a} libicu60{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libpipeline1{a} libpng16-16{a} libpython3-stdlib{a} libpython3.6-minimal{a} libpython3.6-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} libsigsegv2{a} libssl1.1{a} libtiff5{a} libtimedate-perl{a} libtool{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libxml2{a} m4{a} man-db{a} mime-support{a} po-debconf{a} python3{a} python3-all{a} python3-biopython{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-nose{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-reportlab{a} python3-reportlab-accel{a} python3-setuptools{a} python3.6{a} python3.6-minimal{a} python3.7{a} python3.7-minimal{a} readline-common{a} The following packages will be upgraded: gcc-8-base The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile python3-renderpm shared-mime-info wget xdg-user-dirs 1 packages upgraded, 75 newly installed, 0 to remove and 42 not upgraded. Need to get 1217 kB/37.8 MB of archives. After unpacking 156 MB will be used. The following packages have unmet dependencies: cpp-8 : Depends: gcc-8-base (= 8.2.0-4) but 8.2.0-5 is to be installed libasan5 : Depends: gcc-8-base (= 8.2.0-4) but 8.2.0-5 is to be installed libgcc1 : Depends: gcc-8-base (= 8.2.0-4) but 8.2.0-5 is to be installed libgcc-8-dev : Depends: gcc-8-base (= 8.2.0-4) but 8.2.0-5 is to be installed libubsan1 : Depends: gcc-8-base (= 8.2.0-4) but 8.2.0-5 is to be installed g++-8 : Depends: gcc-8-base (= 8.2.0-4) but 8.2.0-5 is to be installed gcc-8 : Depends: gcc-8-base (= 8.2.0-4) but 8.2.0-5 is to be installed libgomp1 : Depends: gcc-8-base (= 8.2.0-4) but 8.2.0-5 is to be installed libatomic1 : Depends: gcc-8-base (= 8.2.0-4) but 8.2.0-5 is to be installed libcc1-0 : Depends: gcc-8-base (= 8.2.0-4) but 8.2.0-5 is to be installed libstdc++6 : Depends: gcc-8-base (= 8.2.0-4) but 8.2.0-5 is to be installed libstdc++-8-dev : Depends: gcc-8-base (= 8.2.0-4) but 8.2.0-5 is to be installed The following actions will resolve these dependencies: Upgrade the following packages: 1) cpp-8 [8.2.0-4 (now) -> 8.2.0-5 (unstable)] 2) g++-8 [8.2.0-4 (now) -> 8.2.0-5 (unstable)] 3) gcc-8 [8.2.0-4 (now) -> 8.2.0-5 (unstable)] 4) libasan5 [8.2.0-4 (now) -> 8.2.0-5 (unstable)] 5) libatomic1 [8.2.0-4 (now) -> 8.2.0-5 (unstable)] 6) libcc1-0 [8.2.0-4 (now) -> 8.2.0-5 (unstable)] 7) libgcc-8-dev [8.2.0-4 (now) -> 8.2.0-5 (unstable)] 8) libgcc1 [1:8.2.0-4 (now) -> 1:8.2.0-5 (unstable)] 9) libgomp1 [8.2.0-4 (now) -> 8.2.0-5 (unstable)] 10) libstdc++-8-dev [8.2.0-4 (now) -> 8.2.0-5 (unstable)] 11) libstdc++6 [8.2.0-4 (now) -> 8.2.0-5 (unstable)] 12) libubsan1 [8.2.0-4 (now) -> 8.2.0-5 (unstable)] The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbsd0{a} libcroco3{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfreetype6{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libicu-le-hb0{a} libicu60{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libpipeline1{a} libpng16-16{a} libpython3-stdlib{a} libpython3.6-minimal{a} libpython3.6-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} libsigsegv2{a} libssl1.1{a} libtiff5{a} libtimedate-perl{a} libtool{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libxml2{a} m4{a} man-db{a} mime-support{a} po-debconf{a} python3{a} python3-all{a} python3-biopython{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-nose{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-reportlab{a} python3-reportlab-accel{a} python3-setuptools{a} python3.6{a} python3.6-minimal{a} python3.7{a} python3.7-minimal{a} readline-common{a} The following packages will be upgraded: cpp-8 g++-8 gcc-8 gcc-8-base libasan5 libatomic1 libcc1-0 libgcc-8-dev libgcc1 libgomp1 libstdc++-8-dev libstdc++6 libubsan1 The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile python3-renderpm shared-mime-info wget xdg-user-dirs 13 packages upgraded, 75 newly installed, 0 to remove and 30 not upgraded. Need to get 1217 kB/58.1 MB of archives. After unpacking 156 MB will be used. Writing extended state information... Get: 1 http://mirror.einval.org/debian sid/main armel python3-biopython armel 1.72+dfsg-1 [1217 kB] Fetched 1217 kB in 0s (15.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armel. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11783 files and directories currently installed.) Preparing to unpack .../libbsd0_0.9.1-1_armel.deb ... Unpacking libbsd0:armel (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_11.1.2+b1_armel.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Preparing to unpack .../libcc1-0_8.2.0-5_armel.deb ... Unpacking libcc1-0:armel (8.2.0-5) over (8.2.0-4) ... Preparing to unpack .../gcc-8-base_8.2.0-5_armel.deb ... Unpacking gcc-8-base:armel (8.2.0-5) over (8.2.0-4) ... Setting up gcc-8-base:armel (8.2.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11909 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a8.2.0-5_armel.deb ... Unpacking libgcc1:armel (1:8.2.0-5) over (1:8.2.0-4) ... Setting up libgcc1:armel (1:8.2.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11909 files and directories currently installed.) Preparing to unpack .../0-libgomp1_8.2.0-5_armel.deb ... Unpacking libgomp1:armel (8.2.0-5) over (8.2.0-4) ... Preparing to unpack .../1-libatomic1_8.2.0-5_armel.deb ... Unpacking libatomic1:armel (8.2.0-5) over (8.2.0-4) ... Preparing to unpack .../2-libasan5_8.2.0-5_armel.deb ... Unpacking libasan5:armel (8.2.0-5) over (8.2.0-4) ... Preparing to unpack .../3-libubsan1_8.2.0-5_armel.deb ... Unpacking libubsan1:armel (8.2.0-5) over (8.2.0-4) ... Preparing to unpack .../4-g++-8_8.2.0-5_armel.deb ... Unpacking g++-8 (8.2.0-5) over (8.2.0-4) ... Preparing to unpack .../5-libstdc++-8-dev_8.2.0-5_armel.deb ... Unpacking libstdc++-8-dev:armel (8.2.0-5) over (8.2.0-4) ... Preparing to unpack .../6-libgcc-8-dev_8.2.0-5_armel.deb ... Unpacking libgcc-8-dev:armel (8.2.0-5) over (8.2.0-4) ... Preparing to unpack .../7-gcc-8_8.2.0-5_armel.deb ... Unpacking gcc-8 (8.2.0-5) over (8.2.0-4) ... Preparing to unpack .../8-cpp-8_8.2.0-5_armel.deb ... Unpacking cpp-8 (8.2.0-5) over (8.2.0-4) ... Preparing to unpack .../9-libstdc++6_8.2.0-5_armel.deb ... Unpacking libstdc++6:armel (8.2.0-5) over (8.2.0-4) ... Setting up libstdc++6:armel (8.2.0-5) ... Selecting previously unselected package groff-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11909 files and directories currently installed.) Preparing to unpack .../0-groff-base_1.22.3-10_armel.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:armel. Preparing to unpack .../1-libpipeline1_1.5.0-1_armel.deb ... Unpacking libpipeline1:armel (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../2-man-db_2.8.4-2_armel.deb ... Unpacking man-db (2.8.4-2) ... Selecting previously unselected package libssl1.1:armel. Preparing to unpack .../3-libssl1.1_1.1.1~~pre9-1_armel.deb ... Unpacking libssl1.1:armel (1.1.1~~pre9-1) ... Selecting previously unselected package libpython3.6-minimal:armel. Preparing to unpack .../4-libpython3.6-minimal_3.6.6-4_armel.deb ... Unpacking libpython3.6-minimal:armel (3.6.6-4) ... Selecting previously unselected package libexpat1:armel. Preparing to unpack .../5-libexpat1_2.2.6-1_armel.deb ... Unpacking libexpat1:armel (2.2.6-1) ... Selecting previously unselected package python3.6-minimal. Preparing to unpack .../6-python3.6-minimal_3.6.6-4_armel.deb ... Unpacking python3.6-minimal (3.6.6-4) ... Setting up libssl1.1:armel (1.1.1~~pre9-1) ... Setting up libpython3.6-minimal:armel (3.6.6-4) ... Setting up libexpat1:armel (2.2.6-1) ... Setting up python3.6-minimal (3.6.6-4) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.6.6-1_armel.deb ... Unpacking python3-minimal (3.6.6-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../1-mime-support_3.61_all.deb ... Unpacking mime-support (3.61) ... Selecting previously unselected package libmpdec2:armel. Preparing to unpack .../2-libmpdec2_2.4.2-2_armel.deb ... Unpacking libmpdec2:armel (2.4.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../3-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:armel. Preparing to unpack .../4-libreadline7_7.0-5_armel.deb ... Unpacking libreadline7:armel (7.0-5) ... Selecting previously unselected package libpython3.6-stdlib:armel. Preparing to unpack .../5-libpython3.6-stdlib_3.6.6-4_armel.deb ... Unpacking libpython3.6-stdlib:armel (3.6.6-4) ... Selecting previously unselected package python3.6. Preparing to unpack .../6-python3.6_3.6.6-4_armel.deb ... Unpacking python3.6 (3.6.6-4) ... Selecting previously unselected package libpython3-stdlib:armel. Preparing to unpack .../7-libpython3-stdlib_3.6.6-1_armel.deb ... Unpacking libpython3-stdlib:armel (3.6.6-1) ... Setting up python3-minimal (3.6.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13109 files and directories currently installed.) Preparing to unpack .../00-python3_3.6.6-1_armel.deb ... Unpacking python3 (3.6.6-1) ... Selecting previously unselected package libpython3.7-minimal:armel. Preparing to unpack .../01-libpython3.7-minimal_3.7.0-6_armel.deb ... Unpacking libpython3.7-minimal:armel (3.7.0-6) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../02-python3.7-minimal_3.7.0-6_armel.deb ... Unpacking python3.7-minimal (3.7.0-6) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.34-2_armel.deb ... Unpacking libmagic-mgc (1:5.34-2) ... Selecting previously unselected package libmagic1:armel. Preparing to unpack .../04-libmagic1_1%3a5.34-2_armel.deb ... Unpacking libmagic1:armel (1:5.34-2) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.34-2_armel.deb ... Unpacking file (1:5.34-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.19.8.1-7_armel.deb ... Unpacking gettext-base (0.19.8.1-7) ... Selecting previously unselected package libsigsegv2:armel. Preparing to unpack .../07-libsigsegv2_2.12-2_armel.deb ... Unpacking libsigsegv2:armel (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../08-m4_1.4.18-1_armel.deb ... Unpacking m4 (1.4.18-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../09-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../10-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../11-automake_1%3a1.16.1-1.1_all.deb ... Unpacking automake (1:1.16.1-1.1) ... Selecting previously unselected package autopoint. Preparing to unpack .../12-autopoint_0.19.8.1-7_all.deb ... Unpacking autopoint (0.19.8.1-7) ... Selecting previously unselected package libtool. Preparing to unpack .../13-libtool_2.4.6-3.1_all.deb ... Unpacking libtool (2.4.6-3.1) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../14-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../15-libarchive-zip-perl_1.63-1_all.deb ... Unpacking libarchive-zip-perl (1.63-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../16-libfile-stripnondeterminism-perl_0.042-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.042-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../17-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../18-dh-strip-nondeterminism_0.042-1_all.deb ... Unpacking dh-strip-nondeterminism (0.042-1) ... Selecting previously unselected package libelf1:armel. Preparing to unpack .../19-libelf1_0.170-0.5_armel.deb ... Unpacking libelf1:armel (0.170-0.5) ... Selecting previously unselected package dwz. Preparing to unpack .../20-dwz_0.12-2_armel.deb ... Unpacking dwz (0.12-2) ... Selecting previously unselected package libglib2.0-0:armel. Preparing to unpack .../21-libglib2.0-0_2.58.0-3_armel.deb ... Unpacking libglib2.0-0:armel (2.58.0-3) ... Selecting previously unselected package libpng16-16:armel. Preparing to unpack .../22-libpng16-16_1.6.34-2_armel.deb ... Unpacking libpng16-16:armel (1.6.34-2) ... Selecting previously unselected package libfreetype6:armel. Preparing to unpack .../23-libfreetype6_2.8.1-2_armel.deb ... Unpacking libfreetype6:armel (2.8.1-2) ... Selecting previously unselected package libgraphite2-3:armel. Preparing to unpack .../24-libgraphite2-3_1.3.12-1_armel.deb ... Unpacking libgraphite2-3:armel (1.3.12-1) ... Selecting previously unselected package libharfbuzz0b:armel. Preparing to unpack .../25-libharfbuzz0b_1.8.8-2_armel.deb ... Unpacking libharfbuzz0b:armel (1.8.8-2) ... Selecting previously unselected package libicu-le-hb0:armel. Preparing to unpack .../26-libicu-le-hb0_1.0.3+git161113-5_armel.deb ... Unpacking libicu-le-hb0:armel (1.0.3+git161113-5) ... Selecting previously unselected package libicu60:armel. Preparing to unpack .../27-libicu60_60.2-6_armel.deb ... Unpacking libicu60:armel (60.2-6) ... Selecting previously unselected package libxml2:armel. Preparing to unpack .../28-libxml2_2.9.4+dfsg1-7+b1_armel.deb ... Unpacking libxml2:armel (2.9.4+dfsg1-7+b1) ... Selecting previously unselected package libcroco3:armel. Preparing to unpack .../29-libcroco3_0.6.12-2_armel.deb ... Unpacking libcroco3:armel (0.6.12-2) ... Selecting previously unselected package gettext. Preparing to unpack .../30-gettext_0.19.8.1-7_armel.deb ... Unpacking gettext (0.19.8.1-7) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../31-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../32-po-debconf_1.0.20_all.deb ... Unpacking po-debconf (1.0.20) ... Selecting previously unselected package debhelper. Preparing to unpack .../33-debhelper_11.3.5_all.deb ... Unpacking debhelper (11.3.5) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../34-python3-lib2to3_3.6.6-1_all.deb ... Unpacking python3-lib2to3 (3.6.6-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../35-python3-distutils_3.6.6-1_all.deb ... Unpacking python3-distutils (3.6.6-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../36-dh-python_3.20180723_all.deb ... Unpacking dh-python (3.20180723) ... Selecting previously unselected package libgfortran5:armel. Preparing to unpack .../37-libgfortran5_8.2.0-5_armel.deb ... Unpacking libgfortran5:armel (8.2.0-5) ... Selecting previously unselected package libblas3:armel. Preparing to unpack .../38-libblas3_3.8.0-1+b1_armel.deb ... Unpacking libblas3:armel (3.8.0-1+b1) ... Selecting previously unselected package libjbig0:armel. Preparing to unpack .../39-libjbig0_2.1-3.1+b2_armel.deb ... Unpacking libjbig0:armel (2.1-3.1+b2) ... Selecting previously unselected package libjpeg62-turbo:armel. Preparing to unpack .../40-libjpeg62-turbo_1%3a1.5.2-2+b1_armel.deb ... Unpacking libjpeg62-turbo:armel (1:1.5.2-2+b1) ... Selecting previously unselected package liblapack3:armel. Preparing to unpack .../41-liblapack3_3.8.0-1+b1_armel.deb ... Unpacking liblapack3:armel (3.8.0-1+b1) ... Selecting previously unselected package liblcms2-2:armel. Preparing to unpack .../42-liblcms2-2_2.9-3_armel.deb ... Unpacking liblcms2-2:armel (2.9-3) ... Selecting previously unselected package libpython3.7-stdlib:armel. Preparing to unpack .../43-libpython3.7-stdlib_3.7.0-6_armel.deb ... Unpacking libpython3.7-stdlib:armel (3.7.0-6) ... Selecting previously unselected package libtiff5:armel. Preparing to unpack .../44-libtiff5_4.0.9-6_armel.deb ... Unpacking libtiff5:armel (4.0.9-6) ... Selecting previously unselected package libwebp6:armel. Preparing to unpack .../45-libwebp6_0.6.1-2_armel.deb ... Unpacking libwebp6:armel (0.6.1-2) ... Selecting previously unselected package libwebpdemux2:armel. Preparing to unpack .../46-libwebpdemux2_0.6.1-2_armel.deb ... Unpacking libwebpdemux2:armel (0.6.1-2) ... Selecting previously unselected package libwebpmux3:armel. Preparing to unpack .../47-libwebpmux3_0.6.1-2_armel.deb ... Unpacking libwebpmux3:armel (0.6.1-2) ... Selecting previously unselected package python3.7. Preparing to unpack .../48-python3.7_3.7.0-6_armel.deb ... Unpacking python3.7 (3.7.0-6) ... Selecting previously unselected package python3-all. Preparing to unpack .../49-python3-all_3.6.6-1_armel.deb ... Unpacking python3-all (3.6.6-1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../50-python3-numpy_1%3a1.14.5-1+b1_armel.deb ... Unpacking python3-numpy (1:1.14.5-1+b1) ... Selecting previously unselected package python3-reportlab-accel:armel. Preparing to unpack .../51-python3-reportlab-accel_3.5.6-1_armel.deb ... Unpacking python3-reportlab-accel:armel (3.5.6-1) ... Selecting previously unselected package python3-pil:armel. Preparing to unpack .../52-python3-pil_5.2.0-2_armel.deb ... Unpacking python3-pil:armel (5.2.0-2) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../53-python3-reportlab_3.5.6-1_all.deb ... Unpacking python3-reportlab (3.5.6-1) ... Selecting previously unselected package python3-biopython. Preparing to unpack .../54-python3-biopython_1.72+dfsg-1_armel.deb ... Unpacking python3-biopython (1.72+dfsg-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../55-python3-pkg-resources_40.2.0-1_all.deb ... Unpacking python3-pkg-resources (40.2.0-1) ... Selecting previously unselected package python3-nose. Preparing to unpack .../56-python3-nose_1.3.7-4_all.deb ... Unpacking python3-nose (1.3.7-4) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../57-python3-setuptools_40.2.0-1_all.deb ... Unpacking python3-setuptools (40.2.0-1) ... Setting up cpp-8 (8.2.0-5) ... Setting up libgomp1:armel (8.2.0-5) ... Setting up libatomic1:armel (8.2.0-5) ... Setting up readline-common (7.0-5) ... Setting up libcc1-0:armel (8.2.0-5) ... Setting up libjpeg62-turbo:armel (1:1.5.2-2+b1) ... Setting up libarchive-zip-perl (1.63-1) ... Setting up mime-support (3.61) ... Setting up libpng16-16:armel (1.6.34-2) ... Setting up libtimedate-perl (2.3000-2) ... Setting up liblcms2-2:armel (2.9-3) ... Setting up libjbig0:armel (2.1-3.1+b2) ... Setting up libsigsegv2:armel (2.12-2) ... Setting up libreadline7:armel (7.0-5) ... Setting up libelf1:armel (0.170-0.5) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:armel (2.58.0-3) ... No schema files found: doing nothing. Setting up libtiff5:armel (4.0.9-6) ... Setting up gettext-base (0.19.8.1-7) ... Setting up libpipeline1:armel (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up libpython3.7-minimal:armel (3.7.0-6) ... Setting up python3.7-minimal (3.7.0-6) ... Setting up libbsd0:armel (0.9.1-1) ... Setting up libfreetype6:armel (2.8.1-2) ... Setting up libmagic-mgc (1:5.34-2) ... Setting up libmagic1:armel (1:5.34-2) ... Setting up libgraphite2-3:armel (1.3.12-1) ... Processing triggers for libc-bin (2.27-5) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libasan5:armel (8.2.0-5) ... Setting up libgfortran5:armel (8.2.0-5) ... Setting up autopoint (0.19.8.1-7) ... Setting up libmpdec2:armel (2.4.2-2) ... Setting up libwebp6:armel (0.6.1-2) ... Setting up libfile-stripnondeterminism-perl (0.042-1) ... Setting up libubsan1:armel (8.2.0-5) ... Setting up libpython3.6-stdlib:armel (3.6.6-4) ... Setting up libpython3.7-stdlib:armel (3.7.0-6) ... Setting up python3.6 (3.6.6-4) ... Setting up libharfbuzz0b:armel (1.8.8-2) ... Setting up python3.7 (3.7.0-6) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.34-2) ... Setting up libblas3:armel (3.8.0-1+b1) ... update-alternatives: using /usr/lib/arm-linux-gnueabi/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabi/libblas.so.3 (libblas.so.3-arm-linux-gnueabi) in auto mode Setting up libwebpmux3:armel (0.6.1-2) ... Setting up automake (1:1.16.1-1.1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libwebpdemux2:armel (0.6.1-2) ... Setting up man-db (2.8.4-2) ... Building database of manual pages ... Setting up libgcc-8-dev:armel (8.2.0-5) ... Setting up libtool (2.4.6-3.1) ... Setting up libpython3-stdlib:armel (3.6.6-1) ... Setting up libstdc++-8-dev:armel (8.2.0-5) ... Setting up python3 (3.6.6-1) ... Setting up liblapack3:armel (3.8.0-1+b1) ... update-alternatives: using /usr/lib/arm-linux-gnueabi/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabi/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabi) in auto mode Setting up python3-pkg-resources (40.2.0-1) ... Setting up gcc-8 (8.2.0-5) ... Setting up g++-8 (8.2.0-5) ... Setting up python3-nose (1.3.7-4) ... Setting up python3-reportlab-accel:armel (3.5.6-1) ... Setting up python3-lib2to3 (3.6.6-1) ... Setting up python3-distutils (3.6.6-1) ... Setting up python3-pil:armel (5.2.0-2) ... Setting up python3-numpy (1:1.14.5-1+b1) ... Setting up python3-reportlab (3.5.6-1) ... Setting up python3-biopython (1.72+dfsg-1) ... Setting up python3-setuptools (40.2.0-1) ... Setting up dh-python (3.20180723) ... Setting up python3-all (3.6.6-1) ... Setting up libicu-le-hb0:armel (1.0.3+git161113-5) ... Setting up libicu60:armel (60.2-6) ... Setting up libxml2:armel (2.9.4+dfsg1-7+b1) ... Setting up libcroco3:armel (0.6.12-2) ... Setting up gettext (0.19.8.1-7) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.20) ... Setting up debhelper (11.3.5) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (0.042-1) ... Processing triggers for libc-bin (2.27-5) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libfakeroot The following NEW packages will be installed: fakeroot libfakeroot debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 2 newly installed, 0 to remove and 30 not upgraded. Need to get 0 B/129 kB of archives. After this operation, 348 kB of additional disk space will be used. Selecting previously unselected package libfakeroot:armel. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17182 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.23-1_armel.deb ... Unpacking libfakeroot:armel (1.23-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.23-1_armel.deb ... Unpacking fakeroot (1.23-1) ... Processing triggers for libc-bin (2.27-5) ... Setting up libfakeroot:armel (1.23-1) ... Processing triggers for man-db (2.8.4-2) ... Setting up fakeroot (1.23-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.27-5) ... I: Copying back the cached apt archive contents I: new cache content 'python3-biopython_1.72+dfsg-1_armel.deb' added I: Building the package I: Running cd /build/seqmagick-0.7.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin" HOME="/nonexistent" dpkg-buildpackage -us -uc -rfakeroot dpkg-buildpackage: info: source package seqmagick dpkg-buildpackage: info: source version 0.7.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build seqmagick-0.7.0 dpkg-buildpackage: info: host architecture armel fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:217: python3.7 setup.py clean running clean removing '/build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build' (and everything under it) /usr/lib/python3/dist-packages/setuptools/dist.py:407: UserWarning: The version specified ('') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. "details." % self.metadata.version 'build/bdist.linux-armel' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it I: pybuild base:217: python3.6 setup.py clean running clean removing '/build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build' (and everything under it) /usr/lib/python3/dist-packages/setuptools/dist.py:407: UserWarning: The version specified ('') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. "details." % self.metadata.version 'build/bdist.linux-armel' does not exist -- can't clean it 'build/scripts-3.6' does not exist -- can't clean it dh_clean -O--buildsystem=pybuild dpkg-source -b seqmagick-0.7.0 dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building seqmagick using existing ./seqmagick_0.7.0.orig.tar.gz dpkg-source: info: building seqmagick in seqmagick_0.7.0-1.debian.tar.xz dpkg-source: info: building seqmagick in seqmagick_0.7.0-1.dsc debian/rules build dh build --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:217: python3.7 setup.py config running config /usr/lib/python3/dist-packages/setuptools/dist.py:407: UserWarning: The version specified ('') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. "details." % self.metadata.version I: pybuild base:217: python3.6 setup.py config running config /usr/lib/python3/dist-packages/setuptools/dist.py:407: UserWarning: The version specified ('') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. "details." % self.metadata.version dh_auto_build -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3.7 setup.py build running build running build_py creating /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick copying seqmagick/__init__.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick copying seqmagick/fileformat.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick copying seqmagick/transform.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick creating /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test copying seqmagick/test/test_subcommands_quality_filter.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test copying seqmagick/test/test_subcommands_common.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test copying seqmagick/test/__init__.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test copying seqmagick/test/test_subcommands_convert.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test copying seqmagick/test/test_primer_trim.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test copying seqmagick/test/test_transform.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test copying seqmagick/test/test_subcommands_backtrans_align.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test creating /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/subcommands copying seqmagick/subcommands/convert.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/subcommands copying seqmagick/subcommands/primer_trim.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/subcommands copying seqmagick/subcommands/quality_filter.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/subcommands copying seqmagick/subcommands/__init__.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/subcommands copying seqmagick/subcommands/extract_ids.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/subcommands copying seqmagick/subcommands/info.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/subcommands copying seqmagick/subcommands/mogrify.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/subcommands copying seqmagick/subcommands/backtrans_align.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/subcommands copying seqmagick/subcommands/common.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/subcommands creating /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/scripts copying seqmagick/scripts/cli.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/scripts copying seqmagick/scripts/__init__.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/scripts creating /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test/integration copying seqmagick/test/integration/test_extract_ids.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test/integration copying seqmagick/test/integration/test_convert.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test/integration copying seqmagick/test/integration/__init__.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test/integration copying seqmagick/test/integration/test_mogrify.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test/integration copying seqmagick/test/integration/test_info.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test/integration creating /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/__init__.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output4.fasta -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input2.fasta.gz -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input2.fasta.bz2 -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output5.fasta -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input4_ambig.fasta -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input3.fasta -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input1.fasta -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2.fasta -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2_ungap_cut.fasta -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input2.fasta -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input5.fasta -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2.phy -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2.nex -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output3.fasta -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test/integration/data /usr/lib/python3/dist-packages/setuptools/dist.py:407: UserWarning: The version specified ('') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. "details." % self.metadata.version I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick copying seqmagick/__init__.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick copying seqmagick/fileformat.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick copying seqmagick/transform.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick creating /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test copying seqmagick/test/test_subcommands_quality_filter.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test copying seqmagick/test/test_subcommands_common.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test copying seqmagick/test/__init__.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test copying seqmagick/test/test_subcommands_convert.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test copying seqmagick/test/test_primer_trim.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test copying seqmagick/test/test_transform.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test copying seqmagick/test/test_subcommands_backtrans_align.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test creating /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/subcommands copying seqmagick/subcommands/convert.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/subcommands copying seqmagick/subcommands/primer_trim.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/subcommands copying seqmagick/subcommands/quality_filter.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/subcommands copying seqmagick/subcommands/__init__.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/subcommands copying seqmagick/subcommands/extract_ids.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/subcommands copying seqmagick/subcommands/info.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/subcommands copying seqmagick/subcommands/mogrify.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/subcommands copying seqmagick/subcommands/backtrans_align.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/subcommands copying seqmagick/subcommands/common.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/subcommands creating /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/scripts copying seqmagick/scripts/cli.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/scripts copying seqmagick/scripts/__init__.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/scripts creating /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test/integration copying seqmagick/test/integration/test_extract_ids.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test/integration copying seqmagick/test/integration/test_convert.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test/integration copying seqmagick/test/integration/__init__.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test/integration copying seqmagick/test/integration/test_mogrify.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test/integration copying seqmagick/test/integration/test_info.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test/integration creating /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/__init__.py -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output4.fasta -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input2.fasta.gz -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input2.fasta.bz2 -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output5.fasta -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input4_ambig.fasta -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input3.fasta -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input1.fasta -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2.fasta -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2_ungap_cut.fasta -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input2.fasta -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/input5.fasta -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2.phy -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output2.nex -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test/integration/data copying seqmagick/test/integration/data/output3.fasta -> /build/seqmagick-0.7.0/.pybuild/cpython3_3.6/build/seqmagick/test/integration/data /usr/lib/python3/dist-packages/setuptools/dist.py:407: UserWarning: The version specified ('') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. "details." % self.metadata.version dh_auto_test -O--buildsystem=pybuild I: pybuild base:217: cd /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build; python3.7 -m nose .SS............SS....ES..S.................................S........................................................................................................ ====================================================================== ERROR: test_info (seqmagick.test.integration.test_info.MultithreadedInfoTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/test/integration/test_info.py", line 29, in test_info cli.main(args) File "/build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/scripts/cli.py", line 29, in main return action(arguments) File "/build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build/seqmagick/subcommands/info.py", line 171, in action pool = multiprocessing.Pool(processes=arguments.threads) File "/usr/lib/python3.7/multiprocessing/context.py", line 119, in Pool context=self.get_context()) File "/usr/lib/python3.7/multiprocessing/pool.py", line 158, in __init__ self._setup_queues() File "/usr/lib/python3.7/multiprocessing/pool.py", line 251, in _setup_queues self._inqueue = self._ctx.SimpleQueue() File "/usr/lib/python3.7/multiprocessing/context.py", line 112, in SimpleQueue return SimpleQueue(ctx=self.get_context()) File "/usr/lib/python3.7/multiprocessing/queues.py", line 332, in __init__ self._rlock = ctx.Lock() File "/usr/lib/python3.7/multiprocessing/context.py", line 67, in Lock return Lock(ctx=self.get_context()) File "/usr/lib/python3.7/multiprocessing/synchronize.py", line 162, in __init__ SemLock.__init__(self, SEMAPHORE, 1, 1, ctx=ctx) File "/usr/lib/python3.7/multiprocessing/synchronize.py", line 59, in __init__ unlink_now) PermissionError: [Errno 13] Permission denied ---------------------------------------------------------------------- Ran 164 tests in 7.880s FAILED (SKIP=7, errors=1) E: pybuild pybuild:338: test: plugin distutils failed with: exit code=1: cd /build/seqmagick-0.7.0/.pybuild/cpython3_3.7/build; python3.7 -m nose dh_auto_test: pybuild --test --test-nose -i python{version} -p "3.7 3.6" returned exit code 13 make: *** [debian/rules:7: build] Error 25 dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2 I: Terminate timeout process I: copying local configuration /usr/lib/pbuilder/pbuilder-modules: line 1: 27846 Terminated ( : Timeout process; sleep "${TIMEOUT_TIME}"; log.i "Terminating build process due to timeout "; kill "${BUILD_PID}" || true ) E: Failed autobuilding of package I: user script /chroot/rebuildd/pbuilder/6058/tmp/hooks/C01kill-gpg-agent starting Found other processes running as uid 1234, killing them: 28106 /tmp/hooks/C01kill-gpg-agent: 22: kill: No such process I: user script /chroot/rebuildd/pbuilder/6058/tmp/hooks/C01kill-gpg-agent finished I: unmounting /sys filesystem I: unmounting /proc filesystem I: unmounting /dev/pts filesystem I: unmounting /dev filesystem I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env  I: removing directory /chroot/rebuildd/pbuilder/6058 and its subdirectories FAILED to build: 1