Sun 23 Dec 19:14:35 GMT 2018: starting 69847: build of hhsuite version 3.0~beta3+dfsg-1 arch armel on mjolnir Running apt-get -q --download-only --only-source source hhsuite=3.0~beta3+dfsg-1 Reading package lists... NOTICE: 'hhsuite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/hhsuite.git Please use: git clone https://salsa.debian.org/med-team/hhsuite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 5,319 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main hhsuite 3.0~beta3+dfsg-1 (dsc) [2,306 B] Get:2 http://mirror.einval.org/debian unstable/main hhsuite 3.0~beta3+dfsg-1 (tar) [5,308 kB] Get:3 http://mirror.einval.org/debian unstable/main hhsuite 3.0~beta3+dfsg-1 (diff) [8,520 B] Fetched 5,319 kB in 0s (37.3 MB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'hhsuite_3.0~beta3+dfsg-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) total 5200 -rw-r--r-- 1 root root 8520 Aug 21 20:34 hhsuite_3.0~beta3+dfsg-1.debian.tar.xz -rw-r--r-- 1 root root 2306 Aug 21 20:34 hhsuite_3.0~beta3+dfsg-1.dsc -rw-r--r-- 1 root root 5308092 Aug 21 20:34 hhsuite_3.0~beta3+dfsg.orig.tar.xz sbuild (Debian sbuild) 0.77.1 (10 September 2018) on mjolnir +==============================================================================+ | hhsuite 3.0~beta3+dfsg-1 (armel) Sun, 23 Dec 2018 19:14:37 +0000 | +==============================================================================+ Package: hhsuite Version: 3.0~beta3+dfsg-1 Source Version: 3.0~beta3+dfsg-1 Distribution: sid Machine Architecture: arm64 Host Architecture: armel Build Architecture: armel Build Type: binary I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-armel-sbuild-2174bb0d-6698-4e0a-8a11-2a0ecd7ad841' with '<>' I: NOTICE: Log filtering will replace 'build/hhsuite-yxohUE/resolver-grV1ra' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian sid InRelease [237 kB] Ign:2 http://mirror.einval.org/debian sid/main armel Packages.diff/Index Get:2 http://mirror.einval.org/debian sid/main armel Packages.diff/Index [27.9 kB] Ign:2 http://mirror.einval.org/debian sid/main armel Packages.diff/Index Get:3 http://mirror.einval.org/debian sid/main armel Packages [7983 kB] Fetched 8221 kB in 4s (2236 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libgpg-error-l10n Use 'apt autoremove' to remove it. The following NEW packages will be installed: libperl5.28 perl-modules-5.28 The following packages will be upgraded: apt binutils binutils-arm-linux-gnueabi binutils-common bsdutils cpp cpp-8 dash debian-archive-keyring e2fsprogs fdisk g++ g++-8 gcc gcc-8 gcc-8-base gpgv grep init-system-helpers libapt-pkg5.0 libasan5 libatomic1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcom-err2 libext2fs2 libfdisk1 libffi6 libgcc-8-dev libgcc1 libgcrypt20 libgdbm-compat4 libgdbm6 libgmp10 libgnutls30 libgomp1 libgpg-error-l10n libgpg-error0 libhogweed4 libmount1 libmpfr6 libnettle6 libsmartcols1 libss2 libstdc++-8-dev libstdc++6 libsystemd0 libubsan1 libudev1 libuuid1 linux-libc-dev mount perl perl-base sed sysvinit-utils tar tzdata util-linux 65 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 50.4 MB of archives. After this operation, 42.3 MB of additional disk space will be used. Get:1 http://mirror.einval.org/debian sid/main armel libc6-dev armel 2.28-3 [2142 kB] Get:2 http://mirror.einval.org/debian sid/main armel libc-dev-bin armel 2.28-3 [265 kB] Get:3 http://mirror.einval.org/debian sid/main armel linux-libc-dev armel 4.19.12-1 [1107 kB] Get:4 http://mirror.einval.org/debian sid/main armel libc6 armel 2.28-3 [2396 kB] Get:5 http://mirror.einval.org/debian sid/main armel libc-bin armel 2.28-3 [649 kB] Get:6 http://mirror.einval.org/debian sid/main armel libubsan1 armel 8.2.0-13 [104 kB] Get:7 http://mirror.einval.org/debian sid/main armel gcc-8-base armel 8.2.0-13 [188 kB] Get:8 http://mirror.einval.org/debian sid/main armel libgcc1 armel 1:8.2.0-13 [38.5 kB] Get:9 http://mirror.einval.org/debian sid/main armel libgomp1 armel 8.2.0-13 [67.5 kB] Get:10 http://mirror.einval.org/debian sid/main armel libatomic1 armel 8.2.0-13 [8960 B] Get:11 http://mirror.einval.org/debian sid/main armel libasan5 armel 8.2.0-13 [319 kB] Get:12 http://mirror.einval.org/debian sid/main armel cpp-8 armel 8.2.0-13 [5476 kB] Get:13 http://mirror.einval.org/debian sid/main armel libcc1-0 armel 8.2.0-13 [30.1 kB] Get:14 http://mirror.einval.org/debian sid/main armel g++-8 armel 8.2.0-13 [5941 kB] Get:15 http://mirror.einval.org/debian sid/main armel gcc-8 armel 8.2.0-13 [5849 kB] Get:16 http://mirror.einval.org/debian sid/main armel libgcc-8-dev armel 8.2.0-13 [600 kB] Get:17 http://mirror.einval.org/debian sid/main armel libstdc++-8-dev armel 8.2.0-13 [1563 kB] Get:18 http://mirror.einval.org/debian sid/main armel libstdc++6 armel 8.2.0-13 [324 kB] Get:19 http://mirror.einval.org/debian sid/main armel libgmp10 armel 2:6.1.2+dfsg-4 [197 kB] Get:20 http://mirror.einval.org/debian sid/main armel libmpfr6 armel 4.0.1-2 [711 kB] Get:21 http://mirror.einval.org/debian sid/main armel libbinutils armel 2.31.1-11 [304 kB] Get:22 http://mirror.einval.org/debian sid/main armel binutils-common armel 2.31.1-11 [2072 kB] Get:23 http://mirror.einval.org/debian sid/main armel binutils armel 2.31.1-11 [56.3 kB] Get:24 http://mirror.einval.org/debian sid/main armel binutils-arm-linux-gnueabi armel 2.31.1-11 [2055 kB] Get:25 http://mirror.einval.org/debian sid/main armel bsdutils armel 1:2.33-0.2 [116 kB] Get:26 http://mirror.einval.org/debian sid/main armel dash armel 0.5.10.2-4 [105 kB] Get:27 http://mirror.einval.org/debian sid/main armel grep armel 3.1-3 [362 kB] Get:28 http://mirror.einval.org/debian sid/main armel perl-modules-5.28 all 5.28.1-3 [2873 kB] Get:29 http://mirror.einval.org/debian sid/main armel libperl5.28 armel 5.28.1-3 [3171 kB] Get:30 http://mirror.einval.org/debian sid/main armel perl armel 5.28.1-3 [204 kB] Get:31 http://mirror.einval.org/debian sid/main armel perl-base armel 5.28.1-3 [1372 kB] Get:32 http://mirror.einval.org/debian sid/main armel libgdbm6 armel 1.18.1-2 [60.9 kB] Get:33 http://mirror.einval.org/debian sid/main armel libgdbm-compat4 armel 1.18.1-2 [43.6 kB] Get:34 http://mirror.einval.org/debian sid/main armel sed armel 4.7-1 [301 kB] Get:35 http://mirror.einval.org/debian sid/main armel tar armel 1.30+dfsg-3 [752 kB] Get:36 http://mirror.einval.org/debian sid/main armel libsmartcols1 armel 2.33-0.2 [139 kB] Get:37 http://mirror.einval.org/debian sid/main armel libuuid1 armel 2.33-0.2 [77.6 kB] Get:38 http://mirror.einval.org/debian sid/main armel libblkid1 armel 2.33-0.2 [181 kB] Get:39 http://mirror.einval.org/debian sid/main armel libfdisk1 armel 2.33-0.2 [223 kB] Get:40 http://mirror.einval.org/debian sid/main armel libmount1 armel 2.33-0.2 [188 kB] Get:41 http://mirror.einval.org/debian sid/main armel fdisk armel 2.33-0.2 [165 kB] Get:42 http://mirror.einval.org/debian sid/main armel util-linux armel 2.33-0.2 [971 kB] Get:43 http://mirror.einval.org/debian sid/main armel libnettle6 armel 3.4.1~rc1-1 [224 kB] Get:44 http://mirror.einval.org/debian sid/main armel libhogweed4 armel 3.4.1~rc1-1 [129 kB] Get:45 http://mirror.einval.org/debian sid/main armel libgnutls30 armel 3.6.5-2 [1020 kB] Get:46 http://mirror.einval.org/debian sid/main armel libudev1 armel 239-15 [131 kB] Get:47 http://mirror.einval.org/debian sid/main armel libapt-pkg5.0 armel 1.8.0~alpha3 [848 kB] Get:48 http://mirror.einval.org/debian sid/main armel libgpg-error-l10n all 1.33-3 [97.4 kB] Get:49 http://mirror.einval.org/debian sid/main armel libgpg-error0 armel 1.33-3 [61.8 kB] Get:50 http://mirror.einval.org/debian sid/main armel libgcrypt20 armel 1.8.4-4 [481 kB] Get:51 http://mirror.einval.org/debian sid/main armel gpgv armel 2.2.12-1 [551 kB] Get:52 http://mirror.einval.org/debian sid/main armel debian-archive-keyring all 2018.1 [57.4 kB] Get:53 http://mirror.einval.org/debian sid/main armel apt armel 1.8.0~alpha3 [1240 kB] Get:54 http://mirror.einval.org/debian sid/main armel init-system-helpers all 1.56+nmu1 [46.8 kB] Get:55 http://mirror.einval.org/debian sid/main armel sysvinit-utils armel 2.93-1 [75.6 kB] Get:56 http://mirror.einval.org/debian sid/main armel libsystemd0 armel 239-15 [275 kB] Get:57 http://mirror.einval.org/debian sid/main armel libext2fs2 armel 1.44.5-1 [206 kB] Get:58 http://mirror.einval.org/debian sid/main armel e2fsprogs armel 1.44.5-1 [546 kB] Get:59 http://mirror.einval.org/debian sid/main armel mount armel 2.33-0.2 [166 kB] Get:60 http://mirror.einval.org/debian sid/main armel libcap-ng0 armel 0.7.9-1+b1 [13.2 kB] Get:61 http://mirror.einval.org/debian sid/main armel libffi6 armel 3.2.1-9 [18.7 kB] Get:62 http://mirror.einval.org/debian sid/main armel tzdata all 2018g-1 [255 kB] Get:63 http://mirror.einval.org/debian sid/main armel g++ armel 4:8.2.0-2 [1620 B] Get:64 http://mirror.einval.org/debian sid/main armel gcc armel 4:8.2.0-2 [5212 B] Get:65 http://mirror.einval.org/debian sid/main armel cpp armel 4:8.2.0-2 [19.3 kB] Get:66 http://mirror.einval.org/debian sid/main armel libcom-err2 armel 1.44.5-1 [67.5 kB] Get:67 http://mirror.einval.org/debian sid/main armel libss2 armel 1.44.5-1 [70.9 kB] debconf: delaying package configuration, since apt-utils is 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Preparing to unpack .../4-libcom-err2_1.44.5-1_armel.deb ... Unpacking libcom-err2:armel (1.44.5-1) over (1.44.4-2) ... Preparing to unpack .../5-libss2_1.44.5-1_armel.deb ... Unpacking libss2:armel (1.44.5-1) over (1.44.4-2) ... Setting up libcom-err2:armel (1.44.5-1) ... Setting up libgomp1:armel (8.2.0-13) ... Setting up libatomic1:armel (8.2.0-13) ... Setting up libss2:armel (1.44.5-1) ... Setting up libcc1-0:armel (8.2.0-13) ... Setting up libgpg-error-l10n (1.33-3) ... Setting up tzdata (2018g-1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Dec 23 19:15:19 UTC 2018. Universal Time is now: Sun Dec 23 19:15:19 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up linux-libc-dev:armel (4.19.12-1) ... Setting up libmpfr6:armel (4.0.1-2) ... Setting up mount (2.33-0.2) ... Setting up e2fsprogs (1.44.5-1) ... Setting up libgdbm6:armel (1.18.1-2) ... Setting up binutils-common:armel (2.31.1-11) ... Setting up perl-modules-5.28 (5.28.1-3) ... Processing triggers for libc-bin (2.28-3) ... Setting up libc-dev-bin (2.28-3) ... Setting up libgdbm-compat4:armel (1.18.1-2) ... Setting up libc6-dev:armel (2.28-3) ... Setting up libasan5:armel (8.2.0-13) ... Setting up libubsan1:armel (8.2.0-13) ... Setting up cpp-8 (8.2.0-13) ... Setting up cpp (4:8.2.0-2) ... Setting up libbinutils:armel (2.31.1-11) ... Setting up libperl5.28:armel (5.28.1-3) ... Setting up perl (5.28.1-3) ... Setting up libgcc-8-dev:armel (8.2.0-13) ... Setting up binutils-arm-linux-gnueabi (2.31.1-11) ... Setting up libstdc++-8-dev:armel (8.2.0-13) ... Setting up binutils (2.31.1-11) ... Setting up gcc-8 (8.2.0-13) ... Setting up g++-8 (8.2.0-13) ... Setting up gcc (4:8.2.0-2) ... Setting up g++ (4:8.2.0-2) ... Processing triggers for libc-bin (2.28-3) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /home/chroots/rebuildd/build-hhsuite-armel/hhsuite_3.0~beta3+dfsg-1.dsc exists in /home/chroots/rebuildd/build-hhsuite-armel; copying to chroot I: NOTICE: Log filtering will replace 'build/hhsuite-yxohUE/hhsuite-3.0~beta3+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/hhsuite-yxohUE' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 10), libffindex0-dev (>= 0.9.9.7+soedinglab), cmake, texlive-latex-base, texlive-latex-recommended, imagemagick, help2man, build-essential, fakeroot Filtered Build-Depends: debhelper (>= 10), libffindex0-dev (>= 0.9.9.7+soedinglab), cmake, texlive-latex-base, texlive-latex-recommended, imagemagick, help2man, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-main-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [429 B] Get:5 copy:/<>/apt_archive ./ Packages [516 B] Fetched 1902 B in 0s (67.8 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libgpg-error-l10n Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core fonts-lmodern gettext gettext-base groff-base help2man hicolor-icon-theme imagemagick imagemagick-6-common imagemagick-6.q16 intltool-debian libarchive-zip-perl libarchive13 libavahi-client3 libavahi-common-data libavahi-common3 libbrotli1 libbsd0 libcairo2 libcroco3 libcups2 libcupsimage2 libcurl4 libdbus-1-3 libelf1 libexpat1 libffindex0 libffindex0-dev libfftw3-double3 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libharfbuzz-icu0 libharfbuzz0b libice6 libicu63 libidn11 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libjsoncpp1 libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 libldap-common liblocale-gettext-perl liblqr-1-0 libltdl7 libmagic-mgc libmagic1 libmagickcore-6.q16-6 libmagickwand-6.q16-6 libncurses6 libnghttp2-14 libopenjp2-7 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpng16-16 libpotrace0 libprocps7 libpsl5 libptexenc1 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh2-1 libssl1.1 libsynctex2 libteckit0 libtexlua52 libtexlua53 libtexluajit2 libtiff5 libtool libuv1 libwebp6 libwoff1 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libxxhash0 libzzip-0-13 lsb-base m4 man-db po-debconf poppler-data procps sensible-utils t1utils tex-common texlive-base texlive-binaries texlive-latex-base texlive-latex-recommended ucf x11-common xdg-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff imagemagick-doc autotrace cups-bsd | lpr | lprng curl enscript ffmpeg gimp gnuplot grads graphviz hp2xx html2ps libwmf-bin mplayer povray radiance sane-utils transfig ufraw-batch lrzip cups-common libfftw3-bin libfftw3-dev krb5-doc krb5-user liblcms2-utils libmagickcore-6.q16-6-extra libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum gv | postscript-viewer perl-tk xpdf-reader | pdf-viewer texlive-latex-base-doc texlive-latex-recommended-doc texlive-pstricks Recommended packages: curl | wget | lynx libmagickcore-6.q16-6-extra ghostscript netpbm libcupsfilters1 ca-certificates dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback krb5-locales gsfonts libgpm2 publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl psmisc lmodern libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core fonts-lmodern gettext gettext-base groff-base help2man hicolor-icon-theme imagemagick imagemagick-6-common imagemagick-6.q16 intltool-debian libarchive-zip-perl libarchive13 libavahi-client3 libavahi-common-data libavahi-common3 libbrotli1 libbsd0 libcairo2 libcroco3 libcups2 libcupsimage2 libcurl4 libdbus-1-3 libelf1 libexpat1 libffindex0 libffindex0-dev libfftw3-double3 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libharfbuzz-icu0 libharfbuzz0b libice6 libicu63 libidn11 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libjsoncpp1 libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblcms2-2 libldap-2.4-2 libldap-common liblocale-gettext-perl liblqr-1-0 libltdl7 libmagic-mgc libmagic1 libmagickcore-6.q16-6 libmagickwand-6.q16-6 libncurses6 libnghttp2-14 libopenjp2-7 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpng16-16 libpotrace0 libprocps7 libpsl5 libptexenc1 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh2-1 libssl1.1 libsynctex2 libteckit0 libtexlua52 libtexlua53 libtexluajit2 libtiff5 libtool libuv1 libwebp6 libwoff1 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libxxhash0 libzzip-0-13 lsb-base m4 man-db po-debconf poppler-data procps sbuild-build-depends-main-dummy sensible-utils t1utils tex-common texlive-base texlive-binaries texlive-latex-base texlive-latex-recommended ucf x11-common xdg-utils 0 upgraded, 139 newly installed, 0 to remove and 0 not upgraded. Need to get 98.9 MB of archives. After this operation, 326 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [936 B] Get:2 http://mirror.einval.org/debian sid/main armel libbsd0 armel 0.9.1-1 [104 kB] Get:3 http://mirror.einval.org/debian sid/main armel bsdmainutils armel 11.1.2+b1 [187 kB] Get:4 http://mirror.einval.org/debian sid/main armel groff-base armel 1.22.3-10 [1086 kB] Get:5 http://mirror.einval.org/debian sid/main armel libpipeline1 armel 1.5.0-2 [25.1 kB] Get:6 http://mirror.einval.org/debian sid/main armel man-db armel 2.8.4-3 [1167 kB] Get:7 http://mirror.einval.org/debian sid/main armel liblocale-gettext-perl armel 1.07-3+b4 [18.2 kB] Get:8 http://mirror.einval.org/debian sid/main armel libfftw3-double3 armel 3.3.8-2 [470 kB] Get:9 http://mirror.einval.org/debian sid/main armel libexpat1 armel 2.2.6-1 [76.4 kB] Get:10 http://mirror.einval.org/debian sid/main armel libpng16-16 armel 1.6.34-2 [273 kB] Get:11 http://mirror.einval.org/debian sid/main armel libfreetype6 armel 2.9.1-3 [320 kB] Get:12 http://mirror.einval.org/debian sid/main armel sensible-utils all 0.0.12 [15.8 kB] Get:13 http://mirror.einval.org/debian sid/main armel ucf all 3.0038+nmu1 [69.0 kB] Get:14 http://mirror.einval.org/debian sid/main armel fonts-dejavu-core all 2.37-1 [1068 kB] Get:15 http://mirror.einval.org/debian sid/main armel fontconfig-config all 2.13.1-2 [280 kB] Get:16 http://mirror.einval.org/debian sid/main armel libfontconfig1 armel 2.13.1-2 [329 kB] Get:17 http://mirror.einval.org/debian sid/main armel libjbig0 armel 2.1-3.1+b2 [27.8 kB] Get:18 http://mirror.einval.org/debian sid/main armel libjpeg62-turbo armel 1:1.5.2-2+b1 [112 kB] Get:19 http://mirror.einval.org/debian sid/main armel liblcms2-2 armel 2.9-3 [124 kB] Get:20 http://mirror.einval.org/debian sid/main armel libglib2.0-0 armel 2.58.1-2 [1056 kB] Get:21 http://mirror.einval.org/debian sid/main armel liblqr-1-0 armel 0.4.2-2.1 [26.2 kB] Get:22 http://mirror.einval.org/debian sid/main armel libltdl7 armel 2.4.6-6 [387 kB] Get:23 http://mirror.einval.org/debian sid/main armel libopenjp2-7 armel 2.3.0-1.1 [140 kB] Get:24 http://mirror.einval.org/debian sid/main armel libwebp6 armel 0.6.1-2 [214 kB] Get:25 http://mirror.einval.org/debian sid/main armel libtiff5 armel 4.0.10-3 [239 kB] Get:26 http://mirror.einval.org/debian sid/main armel libxau6 armel 1:1.0.8-1+b2 [19.1 kB] Get:27 http://mirror.einval.org/debian sid/main armel libxdmcp6 armel 1:1.1.2-3 [25.0 kB] Get:28 http://mirror.einval.org/debian sid/main armel libxcb1 armel 1.13.1-2 [133 kB] Get:29 http://mirror.einval.org/debian sid/main armel libx11-data all 2:1.6.7-1 [298 kB] Get:30 http://mirror.einval.org/debian sid/main armel libx11-6 armel 2:1.6.7-1 [688 kB] Get:31 http://mirror.einval.org/debian sid/main armel libxext6 armel 2:1.3.3-1+b2 [47.7 kB] Get:32 http://mirror.einval.org/debian sid/main armel libicu63 armel 63.1-5 [7979 kB] Get:33 http://mirror.einval.org/debian sid/main armel libxml2 armel 2.9.4+dfsg1-7+b3 [572 kB] Get:34 http://mirror.einval.org/debian sid/main armel imagemagick-6-common all 8:6.9.10.14+dfsg-7 [199 kB] Get:35 http://mirror.einval.org/debian sid/main armel libmagickcore-6.q16-6 armel 8:6.9.10.14+dfsg-7 [1700 kB] Get:36 http://mirror.einval.org/debian sid/main armel libmagickwand-6.q16-6 armel 8:6.9.10.14+dfsg-7 [428 kB] Get:37 http://mirror.einval.org/debian sid/main armel poppler-data all 0.4.9-2 [1473 kB] Get:38 http://mirror.einval.org/debian sid/main armel tex-common all 6.10 [53.0 kB] Get:39 http://mirror.einval.org/debian sid/main armel libncurses6 armel 6.1+20181013-1 [80.5 kB] Get:40 http://mirror.einval.org/debian sid/main armel libprocps7 armel 2:3.3.15-2 [59.8 kB] Get:41 http://mirror.einval.org/debian sid/main armel lsb-base all 10.2018112800 [28.3 kB] Get:42 http://mirror.einval.org/debian sid/main armel procps armel 2:3.3.15-2 [247 kB] Get:43 http://mirror.einval.org/debian sid/main armel libmagic-mgc armel 1:5.34-2 [239 kB] Get:44 http://mirror.einval.org/debian sid/main armel libmagic1 armel 1:5.34-2 [109 kB] Get:45 http://mirror.einval.org/debian sid/main armel file armel 1:5.34-2 [65.0 kB] Get:46 http://mirror.einval.org/debian sid/main armel gettext-base armel 0.19.8.1-9 [118 kB] Get:47 http://mirror.einval.org/debian sid/main armel libsigsegv2 armel 2.12-2 [32.3 kB] Get:48 http://mirror.einval.org/debian sid/main armel m4 armel 1.4.18-2 [190 kB] Get:49 http://mirror.einval.org/debian sid/main armel autoconf all 2.69-11 [341 kB] Get:50 http://mirror.einval.org/debian sid/main armel autotools-dev all 20180224.1 [77.0 kB] Get:51 http://mirror.einval.org/debian sid/main armel automake all 1:1.16.1-4 [771 kB] Get:52 http://mirror.einval.org/debian sid/main armel autopoint all 0.19.8.1-9 [434 kB] Get:53 http://mirror.einval.org/debian sid/main armel cmake-data all 3.13.2-1 [1476 kB] Get:54 http://mirror.einval.org/debian sid/main armel libarchive13 armel 3.3.3-2 [271 kB] Get:55 http://mirror.einval.org/debian sid/main armel libkeyutils1 armel 1.5.9-9.3 [12.0 kB] Get:56 http://mirror.einval.org/debian sid/main armel libkrb5support0 armel 1.16.1-1 [59.3 kB] Get:57 http://mirror.einval.org/debian sid/main armel libk5crypto3 armel 1.16.1-1 [117 kB] Get:58 http://mirror.einval.org/debian sid/main armel libkrb5-3 armel 1.16.1-1 [267 kB] Get:59 http://mirror.einval.org/debian sid/main armel libgssapi-krb5-2 armel 1.16.1-1 [135 kB] Get:60 http://mirror.einval.org/debian sid/main armel libsasl2-modules-db armel 2.1.27~rc8-1 [66.8 kB] Get:61 http://mirror.einval.org/debian sid/main armel libsasl2-2 armel 2.1.27~rc8-1 [97.7 kB] Get:62 http://mirror.einval.org/debian sid/main armel libldap-common all 2.4.46+dfsg-5 [88.3 kB] Get:63 http://mirror.einval.org/debian sid/main armel libldap-2.4-2 armel 2.4.46+dfsg-5+b1 [200 kB] Get:64 http://mirror.einval.org/debian sid/main armel libnghttp2-14 armel 1.35.1-1 [70.8 kB] Get:65 http://mirror.einval.org/debian sid/main armel libpsl5 armel 0.20.2-2 [52.5 kB] Get:66 http://mirror.einval.org/debian sid/main armel librtmp1 armel 2.4+20151223.gitfa8646d.1-2 [54.8 kB] Get:67 http://mirror.einval.org/debian sid/main armel libssh2-1 armel 1.8.0-2 [126 kB] Get:68 http://mirror.einval.org/debian sid/main armel libssl1.1 armel 1.1.1a-1 [1263 kB] Get:69 http://mirror.einval.org/debian sid/main armel libcurl4 armel 7.62.0-1 [286 kB] Get:70 http://mirror.einval.org/debian sid/main armel libjsoncpp1 armel 1.7.4-3 [66.3 kB] Get:71 http://mirror.einval.org/debian sid/main armel librhash0 armel 1.3.6-3 [98.3 kB] Get:72 http://mirror.einval.org/debian sid/main armel libuv1 armel 1.24.0-1 [98.1 kB] Get:73 http://mirror.einval.org/debian sid/main armel cmake armel 3.13.2-1 [2731 kB] Get:74 http://mirror.einval.org/debian sid/main armel libtool all 2.4.6-6 [547 kB] Get:75 http://mirror.einval.org/debian sid/main armel dh-autoreconf all 19 [16.9 kB] Get:76 http://mirror.einval.org/debian sid/main armel libarchive-zip-perl all 1.64-1 [96.8 kB] Get:77 http://mirror.einval.org/debian sid/main armel libfile-stripnondeterminism-perl all 1.0.0-1 [19.5 kB] Get:78 http://mirror.einval.org/debian sid/main armel dh-strip-nondeterminism all 1.0.0-1 [12.5 kB] Get:79 http://mirror.einval.org/debian sid/main armel libelf1 armel 0.175-1 [157 kB] Get:80 http://mirror.einval.org/debian sid/main armel dwz armel 0.12-3 [72.8 kB] Get:81 http://mirror.einval.org/debian sid/main armel libcroco3 armel 0.6.12-2 [133 kB] Get:82 http://mirror.einval.org/debian sid/main armel gettext armel 0.19.8.1-9 [1230 kB] Get:83 http://mirror.einval.org/debian sid/main armel intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:84 http://mirror.einval.org/debian sid/main armel po-debconf all 1.0.21 [248 kB] Get:85 http://mirror.einval.org/debian sid/main armel debhelper all 11.5.4 [1003 kB] Get:86 http://mirror.einval.org/debian sid/main armel fonts-lmodern all 2.004.5-5 [4539 kB] Get:87 http://mirror.einval.org/debian sid/main armel help2man armel 1.47.8 [176 kB] Get:88 http://mirror.einval.org/debian sid/main armel hicolor-icon-theme all 0.17-2 [11.4 kB] Get:89 http://mirror.einval.org/debian sid/main armel imagemagick-6.q16 armel 8:6.9.10.14+dfsg-7 [579 kB] Get:90 http://mirror.einval.org/debian sid/main armel imagemagick armel 8:6.9.10.14+dfsg-7 [155 kB] Get:91 http://mirror.einval.org/debian sid/main armel libavahi-common-data armel 0.7-4+b1 [122 kB] Get:92 http://mirror.einval.org/debian sid/main armel libavahi-common3 armel 0.7-4+b1 [52.4 kB] Get:93 http://mirror.einval.org/debian sid/main armel libdbus-1-3 armel 1.12.12-1 [187 kB] Get:94 http://mirror.einval.org/debian sid/main armel libavahi-client3 armel 0.7-4+b1 [53.9 kB] Get:95 http://mirror.einval.org/debian sid/main armel libbrotli1 armel 1.0.7-1 [259 kB] Get:96 http://mirror.einval.org/debian sid/main armel libpixman-1-0 armel 0.36.0-1 [478 kB] Get:97 http://mirror.einval.org/debian sid/main armel libxcb-render0 armel 1.13.1-2 [108 kB] Get:98 http://mirror.einval.org/debian sid/main armel libxcb-shm0 armel 1.13.1-2 [99.3 kB] Get:99 http://mirror.einval.org/debian sid/main armel libxrender1 armel 1:0.9.10-1 [31.3 kB] Get:100 http://mirror.einval.org/debian sid/main armel libcairo2 armel 1.16.0-1 [619 kB] Get:101 http://mirror.einval.org/debian sid/main armel libcups2 armel 2.2.10-3 [289 kB] Get:102 http://mirror.einval.org/debian sid/main armel libcupsimage2 armel 2.2.10-3 [132 kB] Get:103 http://mirror.einval.org/debian sid/main armel libffindex0 armel 0.9.9.7+sog+git20160415.14274c9-1 [16.2 kB] Get:104 http://mirror.einval.org/debian sid/main armel libffindex0-dev armel 0.9.9.7+sog+git20160415.14274c9-1 [18.2 kB] Get:105 http://mirror.einval.org/debian sid/main armel libgraphite2-3 armel 1.3.12-1 [70.0 kB] Get:106 http://mirror.einval.org/debian sid/main armel libgs9-common all 9.26~dfsg-2 [5137 kB] Get:107 http://mirror.einval.org/debian sid/main armel libidn11 armel 1.33-2.2 [113 kB] Get:108 http://mirror.einval.org/debian sid/main armel libijs-0.35 armel 0.35-13 [16.8 kB] Get:109 http://mirror.einval.org/debian sid/main armel libjbig2dec0 armel 0.15-2 [53.3 kB] Get:110 http://mirror.einval.org/debian sid/main armel libpaper1 armel 1.1.26 [21.5 kB] Get:111 http://mirror.einval.org/debian sid/main armel libgs9 armel 9.26~dfsg-2 [1881 kB] Get:112 http://mirror.einval.org/debian sid/main armel libharfbuzz0b armel 2.3.0-1 [1147 kB] Get:113 http://mirror.einval.org/debian sid/main armel libharfbuzz-icu0 armel 2.3.0-1 [818 kB] Get:114 http://mirror.einval.org/debian sid/main armel x11-common all 1:7.7+19 [251 kB] Get:115 http://mirror.einval.org/debian sid/main armel libice6 armel 2:1.0.9-2 [51.4 kB] Get:116 http://mirror.einval.org/debian sid/main armel libkpathsea6 armel 2018.20181218.49446-1 [162 kB] Get:117 http://mirror.einval.org/debian sid/main armel libpaper-utils armel 1.1.26 [18.2 kB] Get:118 http://mirror.einval.org/debian sid/main armel libpotrace0 armel 1.15-1 [27.5 kB] Get:119 http://mirror.einval.org/debian sid/main armel libptexenc1 armel 2018.20181218.49446-1 [60.1 kB] Get:120 http://mirror.einval.org/debian sid/main armel libsm6 armel 2:1.2.2-1+b3 [31.4 kB] Get:121 http://mirror.einval.org/debian sid/main armel libsynctex2 armel 2018.20181218.49446-1 [74.7 kB] Get:122 http://mirror.einval.org/debian sid/main armel libteckit0 armel 2.5.8+ds2-5 [244 kB] Get:123 http://mirror.einval.org/debian sid/main armel libtexlua52 armel 2018.20181218.49446-1 [94.6 kB] Get:124 http://mirror.einval.org/debian sid/main armel libtexlua53 armel 2018.20181218.49446-1 [107 kB] Get:125 http://mirror.einval.org/debian sid/main armel libtexluajit2 armel 2018.20181218.49446-1 [219 kB] Get:126 http://mirror.einval.org/debian sid/main armel libwoff1 armel 1.0.2-1 [37.1 kB] Get:127 http://mirror.einval.org/debian sid/main armel libxt6 armel 1:1.1.5-1 [155 kB] Get:128 http://mirror.einval.org/debian sid/main armel libxmu6 armel 2:1.1.2-2 [52.9 kB] Get:129 http://mirror.einval.org/debian sid/main armel libxpm4 armel 1:3.5.12-1 [43.3 kB] Get:130 http://mirror.einval.org/debian sid/main armel libxaw7 armel 2:1.0.13-1+b2 [166 kB] Get:131 http://mirror.einval.org/debian sid/main armel libxi6 armel 2:1.7.9-1 [78.8 kB] Get:132 http://mirror.einval.org/debian sid/main armel libxxhash0 armel 0.6.5-2 [11.5 kB] Get:133 http://mirror.einval.org/debian sid/main armel libzzip-0-13 armel 0.13.62-3.1 [51.5 kB] Get:134 http://mirror.einval.org/debian sid/main armel t1utils armel 1.41-2 [54.4 kB] Get:135 http://mirror.einval.org/debian sid/main armel texlive-binaries armel 2018.20181218.49446-1 [8554 kB] Get:136 http://mirror.einval.org/debian sid/main armel xdg-utils all 1.1.3-1 [73.3 kB] Get:137 http://mirror.einval.org/debian sid/main armel texlive-base all 2018.20181214-1 [19.4 MB] Get:138 http://mirror.einval.org/debian sid/main armel texlive-latex-base all 2018.20181214-1 [985 kB] Get:139 http://mirror.einval.org/debian sid/main armel texlive-latex-recommended all 2018.20181214-1 [15.4 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 98.9 MB in 4s (26.8 MB/s) Selecting previously unselected package libbsd0:armel. (Reading database ... 13401 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.9.1-1_armel.deb ... Unpacking libbsd0:armel (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_armel.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.3-10_armel.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:armel. Preparing to unpack .../003-libpipeline1_1.5.0-2_armel.deb ... Unpacking libpipeline1:armel (1.5.0-2) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.8.4-3_armel.deb ... Unpacking man-db (2.8.4-3) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../005-liblocale-gettext-perl_1.07-3+b4_armel.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... 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Unpacking libijs-0.35:armel (0.35-13) ... Selecting previously unselected package libjbig2dec0:armel. Preparing to unpack .../107-libjbig2dec0_0.15-2_armel.deb ... Unpacking libjbig2dec0:armel (0.15-2) ... Selecting previously unselected package libpaper1:armel. Preparing to unpack .../108-libpaper1_1.1.26_armel.deb ... Unpacking libpaper1:armel (1.1.26) ... Selecting previously unselected package libgs9:armel. Preparing to unpack .../109-libgs9_9.26~dfsg-2_armel.deb ... Unpacking libgs9:armel (9.26~dfsg-2) ... Selecting previously unselected package libharfbuzz0b:armel. Preparing to unpack .../110-libharfbuzz0b_2.3.0-1_armel.deb ... Unpacking libharfbuzz0b:armel (2.3.0-1) ... Selecting previously unselected package libharfbuzz-icu0:armel. Preparing to unpack .../111-libharfbuzz-icu0_2.3.0-1_armel.deb ... Unpacking libharfbuzz-icu0:armel (2.3.0-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../112-x11-common_1%3a7.7+19_all.deb ... Unpacking x11-common (1:7.7+19) ... Selecting previously unselected package libice6:armel. Preparing to unpack .../113-libice6_2%3a1.0.9-2_armel.deb ... Unpacking libice6:armel (2:1.0.9-2) ... Selecting previously unselected package libkpathsea6:armel. Preparing to unpack .../114-libkpathsea6_2018.20181218.49446-1_armel.deb ... Unpacking libkpathsea6:armel (2018.20181218.49446-1) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../115-libpaper-utils_1.1.26_armel.deb ... Unpacking libpaper-utils (1.1.26) ... Selecting previously unselected package libpotrace0:armel. Preparing to unpack .../116-libpotrace0_1.15-1_armel.deb ... Unpacking libpotrace0:armel (1.15-1) ... Selecting previously unselected package libptexenc1:armel. Preparing to unpack .../117-libptexenc1_2018.20181218.49446-1_armel.deb ... Unpacking libptexenc1:armel (2018.20181218.49446-1) ... Selecting previously unselected package libsm6:armel. Preparing to unpack .../118-libsm6_2%3a1.2.2-1+b3_armel.deb ... Unpacking libsm6:armel (2:1.2.2-1+b3) ... Selecting previously unselected package libsynctex2:armel. Preparing to unpack .../119-libsynctex2_2018.20181218.49446-1_armel.deb ... Unpacking libsynctex2:armel (2018.20181218.49446-1) ... Selecting previously unselected package libteckit0:armel. Preparing to unpack .../120-libteckit0_2.5.8+ds2-5_armel.deb ... Unpacking libteckit0:armel (2.5.8+ds2-5) ... Selecting previously unselected package libtexlua52:armel. Preparing to unpack .../121-libtexlua52_2018.20181218.49446-1_armel.deb ... Unpacking libtexlua52:armel (2018.20181218.49446-1) ... Selecting previously unselected package libtexlua53:armel. Preparing to unpack .../122-libtexlua53_2018.20181218.49446-1_armel.deb ... Unpacking libtexlua53:armel (2018.20181218.49446-1) ... Selecting previously unselected package libtexluajit2:armel. Preparing to unpack .../123-libtexluajit2_2018.20181218.49446-1_armel.deb ... Unpacking libtexluajit2:armel (2018.20181218.49446-1) ... Selecting previously unselected package libwoff1:armel. Preparing to unpack .../124-libwoff1_1.0.2-1_armel.deb ... Unpacking libwoff1:armel (1.0.2-1) ... Selecting previously unselected package libxt6:armel. Preparing to unpack .../125-libxt6_1%3a1.1.5-1_armel.deb ... Unpacking libxt6:armel (1:1.1.5-1) ... Selecting previously unselected package libxmu6:armel. Preparing to unpack .../126-libxmu6_2%3a1.1.2-2_armel.deb ... Unpacking libxmu6:armel (2:1.1.2-2) ... Selecting previously unselected package libxpm4:armel. Preparing to unpack .../127-libxpm4_1%3a3.5.12-1_armel.deb ... Unpacking libxpm4:armel (1:3.5.12-1) ... Selecting previously unselected package libxaw7:armel. Preparing to unpack .../128-libxaw7_2%3a1.0.13-1+b2_armel.deb ... Unpacking libxaw7:armel (2:1.0.13-1+b2) ... Selecting previously unselected package libxi6:armel. Preparing to unpack .../129-libxi6_2%3a1.7.9-1_armel.deb ... Unpacking libxi6:armel (2:1.7.9-1) ... Selecting previously unselected package libxxhash0:armel. Preparing to unpack .../130-libxxhash0_0.6.5-2_armel.deb ... Unpacking libxxhash0:armel (0.6.5-2) ... Selecting previously unselected package libzzip-0-13:armel. Preparing to unpack .../131-libzzip-0-13_0.13.62-3.1_armel.deb ... Unpacking libzzip-0-13:armel (0.13.62-3.1) ... Selecting previously unselected package t1utils. Preparing to unpack .../132-t1utils_1.41-2_armel.deb ... Unpacking t1utils (1.41-2) ... Selecting previously unselected package texlive-binaries. Preparing to unpack .../133-texlive-binaries_2018.20181218.49446-1_armel.deb ... Unpacking texlive-binaries (2018.20181218.49446-1) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../134-xdg-utils_1.1.3-1_all.deb ... Unpacking xdg-utils (1.1.3-1) ... Selecting previously unselected package texlive-base. Preparing to unpack .../135-texlive-base_2018.20181214-1_all.deb ... Unpacking texlive-base (2018.20181214-1) ... Selecting previously unselected package texlive-latex-base. Preparing to unpack .../136-texlive-latex-base_2018.20181214-1_all.deb ... Unpacking texlive-latex-base (2018.20181214-1) ... Selecting previously unselected package texlive-latex-recommended. Preparing to unpack .../137-texlive-latex-recommended_2018.20181214-1_all.deb ... Unpacking texlive-latex-recommended (2018.20181214-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../138-sbuild-build-depends-main-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libgs9-common (9.26~dfsg-2) ... Setting up libbrotli1:armel (1.0.7-1) ... Setting up libkpathsea6:armel (2018.20181218.49446-1) ... Setting up libtexlua52:armel (2018.20181218.49446-1) ... Setting up imagemagick-6-common (8:6.9.10.14+dfsg-7) ... Setting up libexpat1:armel (2.2.6-1) ... Setting up libopenjp2-7:armel (2.3.0-1.1) ... Setting up libptexenc1:armel (2018.20181218.49446-1) ... Setting up libjpeg62-turbo:armel (1:1.5.2-2+b1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libnghttp2-14:armel (1.35.1-1) ... Setting up libprocps7:armel (2:3.3.15-2) ... Setting up libwoff1:armel (1.0.2-1) ... Setting up libicu63:armel (63.1-5) ... Setting up libpng16-16:armel (1.6.34-2) ... Setting up liblcms2-2:armel (2.9-3) ... Setting up libjbig0:armel (2.1-3.1+b2) ... Setting up libsigsegv2:armel (2.12-2) ... Setting up libldap-common (2.4.46+dfsg-5) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up poppler-data (0.4.9-2) ... Setting up libuv1:armel (1.24.0-1) ... Setting up libpsl5:armel (0.20.2-2) ... Setting up libelf1:armel (0.175-1) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:armel (2.58.1-2) ... No schema files found: doing nothing. Setting up libtexlua53:armel (2018.20181218.49446-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up cmake-data (3.13.2-1) ... Setting up libsynctex2:armel (2018.20181218.49446-1) ... Setting up libffindex0 (0.9.9.7+sog+git20160415.14274c9-1) ... Setting up libpipeline1:armel (1.5.0-2) ... Setting up librtmp1:armel (2.4+20151223.gitfa8646d.1-2) ... Setting up m4 (1.4.18-2) ... Setting up libfftw3-double3:armel (3.3.8-2) ... Setting up libxxhash0:armel (0.6.5-2) ... Setting up libbsd0:armel (0.9.1-1) ... Setting up libxml2:armel (2.9.4+dfsg1-7+b3) ... Setting up libfreetype6:armel (2.9.1-3) ... Setting up libmagic-mgc (1:5.34-2) ... Setting up libmagic1:armel (1:5.34-2) ... Setting up lsb-base (10.2018112800) ... Setting up libgraphite2-3:armel (1.3.12-1) ... Setting up librhash0:armel (1.3.6-3) ... Setting up libcroco3:armel (0.6.12-2) ... Setting up liblqr-1-0:armel (0.4.2-2.1) ... Setting up libjbig2dec0:armel (0.15-2) ... Setting up sensible-utils (0.0.12) ... Setting up libpixman-1-0:armel (0.36.0-1) ... Setting up libssh2-1:armel (1.8.0-2) ... Processing triggers for libc-bin (2.28-3) ... Setting up dwz (0.12-3) ... Setting up autotools-dev (20180224.1) ... Setting up t1utils (1.41-2) ... Setting up libssl1.1:armel (1.1.1a-1) ... Setting up libltdl7:armel (2.4.6-6) ... Setting up libijs-0.35:armel (0.35-13) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libpotrace0:armel (1.15-1) ... Setting up libteckit0:armel (2.5.8+ds2-5) ... Setting up libxdmcp6:armel (1:1.1.2-3) ... Setting up libkeyutils1:armel (1.5.9-9.3) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libzzip-0-13:armel (0.13.62-3.1) ... Setting up xdg-utils (1.1.3-1) ... Setting up hicolor-icon-theme (0.17-2) ... Setting up libncurses6:armel (6.1+20181013-1) ... Setting up libtexluajit2:armel (2018.20181218.49446-1) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libxau6:armel (1:1.0.8-1+b2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libidn11:armel (1.33-2.2) ... Setting up libdbus-1-3:armel (1.12.12-1) ... Setting up fonts-lmodern (2.004.5-5) ... Setting up libavahi-common-data:armel (0.7-4+b1) ... Setting up libwebp6:armel (0.6.1-2) ... Setting up libfile-stripnondeterminism-perl (1.0.0-1) ... Setting up libjsoncpp1:armel (1.7.4-3) ... Setting up gettext (0.19.8.1-9) ... Setting up libarchive13:armel (3.3.3-2) ... Setting up libffindex0-dev (0.9.9.7+sog+git20160415.14274c9-1) ... Setting up libharfbuzz0b:armel (2.3.0-1) ... Setting up libtiff5:armel (4.0.10-3) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.34-2) ... Setting up libkrb5support0:armel (1.16.1-1) ... Setting up ucf (3.0038+nmu1) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up help2man (1.47.8) ... Setting up libice6:armel (2:1.0.9-2) ... Setting up man-db (2.8.4-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libavahi-common3:armel (0.7-4+b1) ... Setting up libxcb1:armel (1.13.1-2) ... Setting up libtool (2.4.6-6) ... Setting up libpaper1:armel (1.1.26) ... Creating config file /etc/papersize with new version Setting up libsm6:armel (2:1.2.2-1+b3) ... Setting up libk5crypto3:armel (1.16.1-1) ... Setting up libpaper-utils (1.1.26) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libxcb-render0:armel (1.13.1-2) ... Setting up libharfbuzz-icu0:armel (2.3.0-1) ... Setting up tex-common (6.10) ... update-language: texlive-base not installed and configured, doing nothing! Setting up po-debconf (1.0.21) ... Setting up libx11-6:armel (2:1.6.7-1) ... Setting up libxcb-shm0:armel (1.13.1-2) ... Setting up libxpm4:armel (1:3.5.12-1) ... Setting up libxt6:armel (1:1.1.5-1) ... Setting up libxrender1:armel (1:0.9.10-1) ... Setting up libavahi-client3:armel (0.7-4+b1) ... Setting up libkrb5-3:armel (1.16.1-1) ... Setting up libfontconfig1:armel (2.13.1-2) ... Setting up libxext6:armel (2:1.3.3-1+b2) ... Setting up libxmu6:armel (2:1.1.2-2) ... Setting up libgssapi-krb5-2:armel (1.16.1-1) ... Setting up libmagickcore-6.q16-6:armel (8:6.9.10.14+dfsg-7) ... Setting up libcups2:armel (2.2.10-3) ... Setting up libxi6:armel (2:1.7.9-1) ... Setting up libxaw7:armel (2:1.0.13-1+b2) ... Setting up libcairo2:armel (1.16.0-1) ... Setting up libsasl2-modules-db:armel (2.1.27~rc8-1) ... Setting up libsasl2-2:armel (2.1.27~rc8-1) ... Setting up libcupsimage2:armel (2.2.10-3) ... Setting up libmagickwand-6.q16-6:armel (8:6.9.10.14+dfsg-7) ... Setting up libldap-2.4-2:armel (2.4.46+dfsg-5+b1) ... Setting up libgs9:armel (9.26~dfsg-2) ... Setting up libcurl4:armel (7.62.0-1) ... Setting up imagemagick-6.q16 (8:6.9.10.14+dfsg-7) ... update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare-im6 (compare-im6) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate-im6 (animate-im6) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert-im6 (convert-im6) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite-im6 (composite-im6) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure-im6 (conjure-im6) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import-im6 (import-im6) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify-im6 (identify-im6) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream-im6 (stream-im6) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display-im6 (display-im6) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage-im6 (montage-im6) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify (mogrify) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode Setting up texlive-binaries (2018.20181218.49446-1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up imagemagick (8:6.9.10.14+dfsg-7) ... Setting up texlive-base (2018.20181214-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex tl-paper: setting paper size for dvipdfmx to letter: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for dvips to letter: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for pdftex to letter: /var/lib/texmf/tex/generic/config/pdftexconfig.tex tl-paper: setting paper size for xdvi to letter: /var/lib/texmf/xdvi/XDvi-paper Setting up cmake (3.13.2-1) ... Setting up texlive-latex-base (2018.20181214-1) ... Setting up texlive-latex-recommended (2018.20181214-1) ... Setting up debhelper (11.5.4) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.0.0-1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-3) ... Processing triggers for tex-common (6.10) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in amd64 all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.20.0-rc7 #24 SMP Wed Dec 5 16:36:03 GMT 2018 arm64 (aarch64) Toolchain package versions: binutils_2.31.1-11 dpkg-dev_1.19.2 g++-8_8.2.0-13 gcc-8_8.2.0-13 libc6-dev_2.28-3 libstdc++-8-dev_8.2.0-13 libstdc++6_8.2.0-13 linux-libc-dev_4.19.12-1 Package versions: adduser_3.118 apt_1.8.0~alpha3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-11 binutils-arm-linux-gnueabi_2.31.1-11 binutils-common_2.31.1-11 bsdmainutils_11.1.2+b1 bsdutils_1:2.33-0.2 build-essential_12.5 bzip2_1.0.6-9 cmake_3.13.2-1 cmake-data_3.13.2-1 coreutils_8.30-1 cpp_4:8.2.0-2 cpp-8_8.2.0-13 dash_0.5.10.2-4 debconf_1.5.69 debhelper_11.5.4 debian-archive-keyring_2018.1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_1.0.0-1 diffutils_1:3.6-1 dpkg_1.19.2 dpkg-dev_1.19.2 dwz_0.12-3 e2fsprogs_1.44.5-1 fakeroot_1.23-1 fdisk_2.33-0.2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 fonts-lmodern_2.004.5-5 g++_4:8.2.0-2 g++-8_8.2.0-13 gcc_4:8.2.0-2 gcc-8_8.2.0-13 gcc-8-base_8.2.0-13 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.12-1 grep_3.1-3 groff-base_1.22.3-10 gzip_1.9-2.1 help2man_1.47.8 hicolor-icon-theme_0.17-2 hostname_3.21 imagemagick_8:6.9.10.14+dfsg-7 imagemagick-6-common_8:6.9.10.14+dfsg-7 imagemagick-6.q16_8:6.9.10.14+dfsg-7 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3+b1 libapt-pkg5.0_1.8.0~alpha3 libarchive-zip-perl_1.64-1 libarchive13_3.3.3-2 libasan5_8.2.0-13 libatomic1_8.2.0-13 libattr1_1:2.4.47-2+b2 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libavahi-client3_0.7-4+b1 libavahi-common-data_0.7-4+b1 libavahi-common3_0.7-4+b1 libbinutils_2.31.1-11 libblkid1_2.33-0.2 libbrotli1_1.0.7-1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-3 libc-dev-bin_2.28-3 libc6_2.28-3 libc6-dev_2.28-3 libcairo2_1.16.0-1 libcap-ng0_0.7.9-1+b1 libcc1-0_8.2.0-13 libcom-err2_1.44.5-1 libcroco3_0.6.12-2 libcups2_2.2.10-3 libcupsimage2_2.2.10-3 libcurl4_7.62.0-1 libdb5.3_5.3.28+dfsg1-0.2 libdbus-1-3_1.12.12-1 libdebconfclient0_0.245 libdpkg-perl_1.19.2 libelf1_0.175-1 libexpat1_2.2.6-1 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.33-0.2 libffi6_3.2.1-9 libffindex0_0.9.9.7+sog+git20160415.14274c9-1 libffindex0-dev_0.9.9.7+sog+git20160415.14274c9-1 libfftw3-double3_3.3.8-2 libfile-stripnondeterminism-perl_1.0.0-1 libfontconfig1_2.13.1-2 libfreetype6_2.9.1-3 libgcc-8-dev_8.2.0-13 libgcc1_1:8.2.0-13 libgcrypt20_1.8.4-4 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perl-modules-5.28_5.28.1-3 po-debconf_1.0.21 poppler-data_0.4.9-2 procps_2:3.3.15-2 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-1 t1utils_1.41-2 tar_1.30+dfsg-3 tex-common_6.10 texlive-base_2018.20181214-1 texlive-binaries_2018.20181218.49446-1 texlive-latex-base_2018.20181214-1 texlive-latex-recommended_2018.20181214-1 tzdata_2018g-1 ucf_3.0038+nmu1 util-linux_2.33-0.2 x11-common_1:7.7+19 xdg-utils_1.1.3-1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: hhsuite Binary: hhsuite, hhsuite-doc, hhsuite-data Architecture: amd64 all Version: 3.0~beta3+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille , Sascha Steinbiss Homepage: http://toolkit.genzentrum.lmu.de/sections/search Standards-Version: 4.2.0 Vcs-Browser: https://salsa.debian.org/med-team/hhsuite Vcs-Git: https://salsa.debian.org/med-team/hhsuite.git Build-Depends: debhelper (>= 10), libffindex0-dev (>= 0.9.9.7+soedinglab), cmake, texlive-latex-base, texlive-latex-recommended, imagemagick, help2man Package-List: hhsuite deb science optional arch=amd64 hhsuite-data deb science optional arch=all hhsuite-doc deb doc optional arch=all Checksums-Sha1: 05d49981c49d153e65630a3b649579d069d272df 5308092 hhsuite_3.0~beta3+dfsg.orig.tar.xz da752cfd7acf42c666103b53f2a5f89eb52185fc 8520 hhsuite_3.0~beta3+dfsg-1.debian.tar.xz Checksums-Sha256: b3cb1971599b7c30568cd5288a00eb8dee494b0d3b481cf0c11c480373975267 5308092 hhsuite_3.0~beta3+dfsg.orig.tar.xz 61482c872db6646a93847f2db7b42ec348e92adeca4967524368e1c02aee648b 8520 hhsuite_3.0~beta3+dfsg-1.debian.tar.xz Files: 835e819270d7e8b1d5a20d0d61b69cfd 5308092 hhsuite_3.0~beta3+dfsg.orig.tar.xz bd576f3bfaaa9de68e344eaccdfec774 8520 hhsuite_3.0~beta3+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlt8ZsoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEtPA/9GvdeJb4N+EZpbyyTFTOI0ggyZ8xbUS6/ 3B0j3VK43j9A6qnT3ujrKigXoDvTKZpQo4COvrBiTf4GIudObwFkqJ7E7ntbR2YH UZvtwv6PBuMku9tU93H1/W/XFk0cHtD1+7sQBXcujCjeOolKOW/j1bXd41+Bwzmg 60b2d80T1HoKcqOi92TxrcUKp/WRKn5PMqlrSsxC+3a7uhzZNkSQD8jC4g2YPCBZ Slrk2wQbEgGPXPX90b+Lf5ea6klmOV9b/SFvZZK6HxJrbYUFV5OaQAUgKVEHgq/c /WoGOoaGE845IFgXlvmMCSvySr6JOFq2EEBVd+HHZhbzdOuxu95EbdfTgLuW29bW jj3B9Xrv2+AqQ7gE9x1K8kODf1i5Bjb5Chr+qnxp0YbkkGlWI2FMkCTB5zq4erlq OJr5/HccpfI//atSAaJwAYY9L8ZI0neU9pV89pfEY1mb/TGOyOgWJPRl+ntS6kQL QFnJL0Uq/nsuJsy/ACWGpBsVT+R+ZQ30HMwelha3lEMn7xt15+g6ubuWSVmHloxn Y5Z5688LsEQLbROGY2+kyS3qFDRS0EpLR3iCboeSe+VG4JsNVPXd4Kyy2EZRfOPo oulkpAafn3nkgqwFCFFRq164wLLJYN1hN6M81pmZ337PZvxTvihNZ8UUzlbUDZjl F5qZaGYfkFo= =ZPrW -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Aug 21 19:23:54 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./hhsuite_3.0~beta3+dfsg-1.dsc dpkg-source: info: extracting hhsuite in /<> dpkg-source: info: unpacking hhsuite_3.0~beta3+dfsg.orig.tar.xz dpkg-source: info: unpacking hhsuite_3.0~beta3+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying perlscript_uselib dpkg-source: info: applying perl_interpreter dpkg-source: info: applying add_Makefile_in_data.patch dpkg-source: info: applying disable-ffindex-build.patch dpkg-source: info: applying drop-fmemopen.h.patch dpkg-source: info: applying build-own-manual-PDF.patch dpkg-source: info: applying set-default-HHLIB-dir.patch dpkg-source: info: applying disable-AVX-SSE.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ ulimit -c --------- 10000000000 I: Finished running 'ulimit -c'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LC_ALL=POSIX LC_COLLATE=C LC_CTYPE=en_GB.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=sid-armel-sbuild SCHROOT_CHROOT_NAME=sid-armel-sbuild SCHROOT_COMMAND=env SCHROOT_GID=117 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=sid-armel-sbuild-2174bb0d-6698-4e0a-8a11-2a0ecd7ad841 SCHROOT_UID=111 SCHROOT_USER=sbuild SHELL=/bin/sh USER=sbuild dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package hhsuite dpkg-buildpackage: info: source version 3.0~beta3+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel fakeroot debian/rules clean dh clean --builddirectory=mybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean rm -f hhalign.1 hhblits.1 hhblits_omp.1 hhconsensus.1 hhfilter.1 hhmake.1 hhsearch.1 find . -name "*.rej" -delete find . -name "*~" -delete dh_clean make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--builddirectory=mybuild dh_clean -O--builddirectory=mybuild debian/rules build dh build --builddirectory=mybuild dh_update_autotools_config -O--builddirectory=mybuild dh_autoreconf -O--builddirectory=mybuild dh_auto_configure -O--builddirectory=mybuild cd mybuild && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabi .. -- The CXX compiler identification is GNU 8.2.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler is GNU -- Processor is armv8l !! NOT X86 OR X86_64 !! -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found OpenMP -- Found LATEX: /usr/bin/latex -- Found UnixCommands: /bin/bash -- I could not find the ps2pdf command. -- I could not find the pdftops command. -- I could not find the latex2html command. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/mybuild debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- NO_PNG=1 cd mybuild && make -j4 NO_PNG=1 make[2]: Entering directory '/<>/mybuild' /usr/bin/cmake -S"/<>" -B"/<>/mybuild" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/<>/mybuild/CMakeFiles" "/<>/mybuild/CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/mybuild' make -f src/CMakeFiles/A3M_COMPRESS_OBJECT.dir/build.make src/CMakeFiles/A3M_COMPRESS_OBJECT.dir/depend make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/depend make -f src/CMakeFiles/CS_OBJECTS.dir/build.make src/CMakeFiles/CS_OBJECTS.dir/depend make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/depend make[4]: Entering directory '/<>/mybuild' cd "/<>/mybuild" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/src" "/<>/mybuild" "/<>/mybuild/src" "/<>/mybuild/src/CMakeFiles/A3M_COMPRESS_OBJECT.dir/DependInfo.cmake" --color= make[4]: Entering directory '/<>/mybuild' cd "/<>/mybuild" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/src" "/<>/mybuild" "/<>/mybuild/src" "/<>/mybuild/src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/DependInfo.cmake" --color= make[4]: Entering directory '/<>/mybuild' cd "/<>/mybuild" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/src" "/<>/mybuild" "/<>/mybuild/src" "/<>/mybuild/src/CMakeFiles/CS_OBJECTS.dir/DependInfo.cmake" --color= make[4]: Entering directory '/<>/mybuild' cd "/<>/mybuild" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/src" "/<>/mybuild" "/<>/mybuild/src" "/<>/mybuild/src/CMakeFiles/HH_OBJECTS.dir/DependInfo.cmake" --color= Scanning dependencies of target A3M_COMPRESS_OBJECT Scanning dependencies of target CS_OBJECTS Scanning dependencies of target hhviterbialgorithm_with_celloff_and_ss make[4]: Leaving directory '/<>/mybuild' make[4]: Leaving directory '/<>/mybuild' make -f src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build make -f src/CMakeFiles/CS_OBJECTS.dir/build.make src/CMakeFiles/CS_OBJECTS.dir/build make[4]: Leaving directory '/<>/mybuild' make -f src/CMakeFiles/A3M_COMPRESS_OBJECT.dir/build.make src/CMakeFiles/A3M_COMPRESS_OBJECT.dir/build make[4]: Entering directory '/<>/mybuild' make[4]: Entering directory '/<>/mybuild' make[4]: Entering directory '/<>/mybuild' [ 1%] Building CXX object src/CMakeFiles/CS_OBJECTS.dir/cs/aa.cc.o cd "/<>/mybuild/src" && /usr/bin/c++ -DOPENMP -I"/<>/src" -I"/<>/src/cs" -I"/<>/mybuild" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fno-strict-aliasing -o CMakeFiles/CS_OBJECTS.dir/cs/aa.cc.o -c "/<>/src/cs/aa.cc" [ 2%] Building CXX object src/CMakeFiles/A3M_COMPRESS_OBJECT.dir/a3m_compress.cpp.o cd "/<>/mybuild/src" && /usr/bin/c++ -DOPENMP -I"/<>/src" -I"/<>/src/cs" -I"/<>/mybuild" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fno-strict-aliasing -o CMakeFiles/A3M_COMPRESS_OBJECT.dir/a3m_compress.cpp.o -c "/<>/src/a3m_compress.cpp" [ 4%] Building CXX object src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o cd "/<>/mybuild/src" && /usr/bin/c++ -DOPENMP -I"/<>/src" -I"/<>/src/cs" -I"/<>/mybuild" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fno-strict-aliasing -DVITERBI_CELLOFF=1 -DVITERBI_SS_SCORE=1 -o CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o -c "/<>/src/hhviterbialgorithm.cpp" Scanning dependencies of target HH_OBJECTS make[4]: Leaving directory '/<>/mybuild' make -f src/CMakeFiles/HH_OBJECTS.dir/build.make src/CMakeFiles/HH_OBJECTS.dir/build make[4]: Entering directory '/<>/mybuild' [ 5%] Building CXX object src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o cd "/<>/mybuild/src" && /usr/bin/c++ -DOPENMP -I"/<>/src" -I"/<>/src/cs" -I"/<>/mybuild" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fno-strict-aliasing -o CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o -c "/<>/src/hhblits.cpp" In file included from /<>/src/hhhmm.h:10, from /<>/src/hhhit.h:20, from /<>/src/hhviterbi.h:11, from /<>/src/hhviterbialgorithm.cpp:7: /<>/src/util.h: In function 'T** malloc_matrix(int, int)': /<>/src/util.h:46:56: error: 'ALIGN_FLOAT' was not declared in this scope size_t size_pointer_array = ICEIL(dim1*sizeof(T*), ALIGN_FLOAT); ^~~~~~~~~~~ /<>/src/util.h:27:41: note: in definition of macro 'ICEIL' #define ICEIL(x_int, fac_int) ((x_int + fac_int - 1) / fac_int) * fac_int ^~~~~~~ [ 7%] Building CXX object src/CMakeFiles/CS_OBJECTS.dir/cs/as.cc.o cd "/<>/mybuild/src" && /usr/bin/c++ -DOPENMP -I"/<>/src" -I"/<>/src/cs" -I"/<>/mybuild" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fno-strict-aliasing -o CMakeFiles/CS_OBJECTS.dir/cs/as.cc.o -c "/<>/src/cs/as.cc" In file included from /<>/src/hhutil.h:13, from /<>/src/hhdatabase.h:23, from /<>/src/hhdecl.h:115, from /<>/src/hhhmm.h:16, from /<>/src/hhhit.h:20, from /<>/src/hhviterbi.h:11, from /<>/src/hhviterbialgorithm.cpp:7: /<>/src/hhutil-inl.h: At global scope: /<>/src/hhutil-inl.h:371:8: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? inline simd_float simdf32_fpow2(simd_float X) { ^~~~~~~~~~ simd_hmax In file included from /<>/src/hhutil.h:13, from /<>/src/hhdatabase.h:23, from /<>/src/hhdecl.h:115, from /<>/src/hhhmm.h:16, from /<>/src/hhhit.h:20, from /<>/src/hhviterbi.h:11, from /<>/src/hhviterbialgorithm.cpp:7: /<>/src/hhutil-inl.h:467:8: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? inline simd_float simdf32_flog2(simd_float X) { ^~~~~~~~~~ simd_hmax /<>/src/hhutil-inl.h:509:8: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? inline simd_float log2f4(simd_float x) ^~~~~~~~~~ simd_hmax /<>/src/hhutil-inl.h:588:8: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? inline simd_float simd_flog2_sum_fpow2(simd_float x1, simd_float x2, simd_float x3) { ^~~~~~~~~~ simd_hmax /<>/src/hhutil-inl.h:628:8: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? inline simd_float simd_flog2_sum_fpow2(simd_float x1, simd_float x2) { ^~~~~~~~~~ simd_hmax In file included from /<>/src/hhdatabase.h:24, from /<>/src/hhdecl.h:115, from /<>/src/hhhmm.h:16, from /<>/src/hhhit.h:20, from /<>/src/hhviterbi.h:11, from /<>/src/hhviterbialgorithm.cpp:7: /<>/src/hhprefilter.h:103:61: error: 'simd_int' has not been declared const int dbseq_length, const unsigned char score_offset, simd_int* workspace); ^~~~~~~~ /<>/src/hhprefilter.h:111:3: error: 'simd_int' has not been declared simd_int *pvHLoad, ^~~~~~~~ /<>/src/hhprefilter.h:112:3: error: 'simd_int' has not been declared simd_int *pvHStore, ^~~~~~~~ /<>/src/hhprefilter.h:113:3: error: 'simd_int' has not been declared simd_int *pvE, ^~~~~~~~ In file included from /<>/src/hhviterbimatrix.h:13, from /<>/src/hhviterbi.h:12, from /<>/src/hhviterbialgorithm.cpp:7: /<>/src/hhhmmsimd.h:21:5: error: 'simd_int' does not name a type; did you mean 'si_int'? simd_int * lengths; // length of HMMs respectively ^~~~~~~~ si_int /<>/src/hhhmmsimd.h:23:5: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? simd_float * tr; // tr_m2m[i] = log2 of transition probabilities M2M ^~~~~~~~~~ simd_hmax In file included from /<>/src/hhviterbi.h:12, from /<>/src/hhviterbialgorithm.cpp:7: /<>/src/hhviterbimatrix-inl.h: In member function 'void ViterbiMatrix::setCellOff(int, int, int, bool)': /<>/src/hhviterbimatrix-inl.h:29:56: error: 'VECSIZE_FLOAT' was not declared in this scope BIT_SET(this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem],7); ^~~~~~~~~~~~~ /<>/src/hhviterbimatrix.h:16:24: note: in definition of macro 'BIT_SET' #define BIT_SET(a,b) ((a) |= (1<<(b))) ^ /<>/src/hhviterbimatrix-inl.h:32:58: error: 'VECSIZE_FLOAT' was not declared in this scope BIT_CLEAR(this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem], 7); ^~~~~~~~~~~~~ /<>/src/hhviterbimatrix.h:17:26: note: in definition of macro 'BIT_CLEAR' #define BIT_CLEAR(a,b) ((a) &= ~(1<<(b))) ^ /<>/src/hhviterbimatrix-inl.h: In member function 'void ViterbiMatrix::setMatIns(int, int, int, bool)': /<>/src/hhviterbimatrix-inl.h:38:56: error: 'VECSIZE_FLOAT' was not declared in this scope BIT_SET(this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem],6); ^~~~~~~~~~~~~ /<>/src/hhviterbimatrix.h:16:24: note: in definition of macro 'BIT_SET' #define BIT_SET(a,b) ((a) |= (1<<(b))) ^ /<>/src/hhviterbimatrix-inl.h:40:58: error: 'VECSIZE_FLOAT' was not declared in this scope BIT_CLEAR(this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem], 6); ^~~~~~~~~~~~~ /<>/src/hhviterbimatrix.h:17:26: note: in definition of macro 'BIT_CLEAR' #define BIT_CLEAR(a,b) ((a) &= ~(1<<(b))) ^ /<>/src/hhviterbimatrix-inl.h: In member function 'void ViterbiMatrix::setDelGap(int, int, int, bool)': /<>/src/hhviterbimatrix-inl.h:46:56: error: 'VECSIZE_FLOAT' was not declared in this scope BIT_SET(this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem],5); ^~~~~~~~~~~~~ /<>/src/hhviterbimatrix.h:16:24: note: in definition of macro 'BIT_SET' #define BIT_SET(a,b) ((a) |= (1<<(b))) ^ /<>/src/hhviterbimatrix-inl.h:48:58: error: 'VECSIZE_FLOAT' was not declared in this scope BIT_CLEAR(this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem], 5); ^~~~~~~~~~~~~ /<>/src/hhviterbimatrix.h:17:26: note: in definition of macro 'BIT_CLEAR' #define BIT_CLEAR(a,b) ((a) &= ~(1<<(b))) ^ /<>/src/hhviterbimatrix-inl.h: In member function 'void ViterbiMatrix::setInsMat(int, int, int, bool)': /<>/src/hhviterbimatrix-inl.h:54:56: error: 'VECSIZE_FLOAT' was not declared in this scope BIT_SET(this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem],4); ^~~~~~~~~~~~~ /<>/src/hhviterbimatrix.h:16:24: note: in definition of macro 'BIT_SET' #define BIT_SET(a,b) ((a) |= (1<<(b))) ^ /<>/src/hhviterbimatrix-inl.h:56:58: error: 'VECSIZE_FLOAT' was not declared in this scope BIT_CLEAR(this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem], 4); ^~~~~~~~~~~~~ /<>/src/hhviterbimatrix.h:17:26: note: in definition of macro 'BIT_CLEAR' #define BIT_CLEAR(a,b) ((a) &= ~(1<<(b))) ^ /<>/src/hhviterbimatrix-inl.h: In member function 'void ViterbiMatrix::setGapDel(int, int, int, bool)': /<>/src/hhviterbimatrix-inl.h:62:56: error: 'VECSIZE_FLOAT' was not declared in this scope BIT_SET(this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem],3); ^~~~~~~~~~~~~ /<>/src/hhviterbimatrix.h:16:24: note: in definition of macro 'BIT_SET' #define BIT_SET(a,b) ((a) |= (1<<(b))) ^ /<>/src/hhviterbimatrix-inl.h:64:58: error: 'VECSIZE_FLOAT' was not declared in this scope BIT_CLEAR(this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem], 3); ^~~~~~~~~~~~~ /<>/src/hhviterbimatrix.h:17:26: note: in definition of macro 'BIT_CLEAR' #define BIT_CLEAR(a,b) ((a) &= ~(1<<(b))) ^ make[4]: Leaving directory '/<>/mybuild' In file included from /<>/src/hhviterbimatrix.h:86, from /<>/src/hhviterbi.h:12, from /<>/src/hhviterbialgorithm.cpp:7: /<>/src/hhviterbimatrix-inl.h: In member function 'void ViterbiMatrix::setMatMat(int, int, int, unsigned char)': /<>/src/hhviterbimatrix-inl.h:73:48: error: 'VECSIZE_FLOAT' was not declared in this scope this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem] = ^~~~~~~~~~~~~ /<>/src/hhviterbimatrix-inl.h: In member function 'bool ViterbiMatrix::getCellOff(int, int, int)': /<>/src/hhviterbimatrix-inl.h:78:74: error: 'VECSIZE_FLOAT' was not declared in this scope unsigned char vCO_MI_DG_GD_MM=this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem]; ^~~~~~~~~~~~~ /<>/src/hhviterbimatrix-inl.h: In member function 'bool ViterbiMatrix::getMatIns(int, int, int)': /<>/src/hhviterbimatrix-inl.h:84:74: error: 'VECSIZE_FLOAT' was not declared in this scope unsigned char vCO_MI_DG_GD_MM=this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem]; ^~~~~~~~~~~~~ /<>/src/hhviterbimatrix-inl.h: In member function 'bool ViterbiMatrix::getDelGap(int, int, int)': /<>/src/hhviterbimatrix-inl.h:90:74: error: 'VECSIZE_FLOAT' was not declared in this scope unsigned char vCO_MI_DG_GD_MM=this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem]; ^~~~~~~~~~~~~ /<>/src/hhviterbimatrix-inl.h: In member function 'bool ViterbiMatrix::getInsMat(int, int, int)': /<>/src/hhviterbimatrix-inl.h:96:74: error: 'VECSIZE_FLOAT' was not declared in this scope unsigned char vCO_MI_DG_GD_MM=this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem]; ^~~~~~~~~~~~~ /<>/src/hhviterbimatrix-inl.h: In member function 'bool ViterbiMatrix::getGapDel(int, int, int)': /<>/src/hhviterbimatrix-inl.h:102:74: error: 'VECSIZE_FLOAT' was not declared in this scope unsigned char vCO_MI_DG_GD_MM=this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem]; ^~~~~~~~~~~~~ /<>/src/hhviterbimatrix-inl.h: In member function 'int ViterbiMatrix::getMatMat(int, int, int)': /<>/src/hhviterbimatrix-inl.h:108:74: error: 'VECSIZE_FLOAT' was not declared in this scope unsigned char vCO_MI_DG_GD_MM=this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem]; ^~~~~~~~~~~~~ In file included from /<>/src/hhviterbialgorithm.cpp:7: /<>/src/hhviterbi.h: At global scope: /<>/src/hhviterbi.h:22:15: error: 'VECSIZE_FLOAT' was not declared in this scope int i[VECSIZE_FLOAT]; ^~~~~~~~~~~~~ /<>/src/hhviterbi.h:23:15: error: 'VECSIZE_FLOAT' was not declared in this scope int j[VECSIZE_FLOAT]; ^~~~~~~~~~~~~ [ 7%] Built target A3M_COMPRESS_OBJECT /<>/src/hhviterbi.h:24:21: error: 'VECSIZE_FLOAT' was not declared in this scope float score[VECSIZE_FLOAT]; ^~~~~~~~~~~~~ /<>/src/hhviterbi.h:100:21: error: 'VECSIZE_FLOAT' was not declared in this scope int start_i[VECSIZE_FLOAT], int start_j[VECSIZE_FLOAT]); ^~~~~~~~~~~~~ /<>/src/hhviterbi.h:100:35: error: expected ')' before ',' token int start_i[VECSIZE_FLOAT], int start_j[VECSIZE_FLOAT]); ^ ) /<>/src/hhviterbi.h:99:37: note: to match this '(' static BacktraceResult Backtrace(ViterbiMatrix * matrix, int elem, ^ /<>/src/hhviterbi.h:100:37: error: expected unqualified-id before 'int' int start_i[VECSIZE_FLOAT], int start_j[VECSIZE_FLOAT]); ^~~ /<>/src/hhviterbi.h:108:30: error: 'VECSIZE_FLOAT' was not declared in this scope float alignmentScore[VECSIZE_FLOAT], int ss_hmm_mode); ^~~~~~~~~~~~~ /<>/src/hhviterbi.h:108:44: error: expected ')' before ',' token float alignmentScore[VECSIZE_FLOAT], int ss_hmm_mode); ^ ) /<>/src/hhviterbi.h:106:37: note: to match this '(' BacktraceScore ScoreForBacktrace(HMMSimd* q_four, HMMSimd* t_four, int elem, ^ /<>/src/hhviterbi.h:108:46: error: expected unqualified-id before 'int' float alignmentScore[VECSIZE_FLOAT], int ss_hmm_mode); ^~~ /<>/src/hhviterbi.h:163:19: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? static inline simd_float ScalarProd20Vec(simd_float* qi, simd_float* tj) { ^~~~~~~~~~ simd_hmax /<>/src/hhviterbi.h:242:12: error: 'simd_int' does not name a type; did you mean 'si_int'? inline simd_int scoreLookup30(simd_int score_matrix_vec01, ^~~~~~~~ si_int /<>/src/hhviterbi.h:298:5: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? simd_float * sMM_DG_MI_GD_IM_vec; // one vector for cache line optimization ^~~~~~~~~~ simd_hmax /<>/src/hhviterbi.h: In constructor 'Viterbi::ViterbiResult::ViterbiResult()': /<>/src/hhviterbi.h:26:35: error: 'VECSIZE_FLOAT' was not declared in this scope for(int idx = 0; idx< VECSIZE_FLOAT;idx++){ ^~~~~~~~~~~~~ In file included from /<>/src/hhdecl.h:114, from /<>/src/hhblits.h:59, from /<>/src/hhblits.cpp:8: /<>/src/util.h: In function 'T** malloc_matrix(int, int)': /<>/src/util.h:46:56: error: 'ALIGN_FLOAT' was not declared in this scope size_t size_pointer_array = ICEIL(dim1*sizeof(T*), ALIGN_FLOAT); ^~~~~~~~~~~ /<>/src/util.h:27:41: note: in definition of macro 'ICEIL' #define ICEIL(x_int, fac_int) ((x_int + fac_int - 1) / fac_int) * fac_int ^~~~~~~ /<>/src/hhviterbi.h:27:17: error: 'i' was not declared in this scope i[idx] = -1; ^ /<>/src/hhviterbi.h:28:17: error: 'j' was not declared in this scope j[idx] = -1; ^ /<>/src/hhviterbi.h:28:17: note: suggested alternative: 'jn' j[idx] = -1; ^ jn /<>/src/hhviterbi.h:29:17: error: 'score' was not declared in this scope score[idx] = 0.0f; ^~~~~ /<>/src/hhviterbi.h:29:17: note: suggested alternative: 'Score' score[idx] = 0.0f; ^~~~~ Score [ 8%] Building CXX object src/CMakeFiles/CS_OBJECTS.dir/cs/assert_helpers.cc.o /<>/src/hhviterbialgorithm.cpp: In member function 'void Viterbi::AlignWithCellOffAndSS(HMMSimd*, HMMSimd*, ViterbiMatrix*, int, Viterbi::ViterbiResult*, int)': /<>/src/hhviterbialgorithm.cpp:78:11: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? const simd_float smin_vec = simdf32_set(smin); ^~~~~~~~~~ simd_hmax cd "/<>/mybuild/src" && /usr/bin/c++ -DOPENMP -I"/<>/src" -I"/<>/src/cs" -I"/<>/mybuild" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fno-strict-aliasing -o CMakeFiles/CS_OBJECTS.dir/cs/assert_helpers.cc.o -c "/<>/src/cs/assert_helpers.cc" /<>/src/hhviterbialgorithm.cpp:79:11: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? const simd_float shift_vec = simdf32_set(shift); ^~~~~~~~~~ simd_hmax In file included from /<>/src/hhutil.h:13, from /<>/src/hhdatabase.h:23, from /<>/src/hhdecl.h:115, from /<>/src/hhblits.h:59, from /<>/src/hhblits.cpp:8: /<>/src/hhutil-inl.h: At global scope: /<>/src/hhutil-inl.h:371:8: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? inline simd_float simdf32_fpow2(simd_float X) { ^~~~~~~~~~ simd_hmax /<>/src/hhviterbialgorithm.cpp:81:11: error: 'simd_int' does not name a type; did you mean 'si_int'? const simd_int mm_vec = simdi32_set(2); //MM 00000010 ^~~~~~~~ si_int /<>/src/hhviterbialgorithm.cpp:82:11: error: 'simd_int' does not name a type; did you mean 'si_int'? const simd_int gd_vec = simdi32_set(3); //GD 00000011 ^~~~~~~~ si_int In file included from /<>/src/hhutil.h:13, from /<>/src/hhdatabase.h:23, from /<>/src/hhdecl.h:115, from /<>/src/hhblits.h:59, from /<>/src/hhblits.cpp:8: /<>/src/hhutil-inl.h:467:8: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? inline simd_float simdf32_flog2(simd_float X) { ^~~~~~~~~~ simd_hmax /<>/src/hhutil-inl.h:509:8: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? inline simd_float log2f4(simd_float x) ^~~~~~~~~~ simd_hmax /<>/src/hhviterbialgorithm.cpp:83:11: error: 'simd_int' does not name a type; did you mean 'si_int'? const simd_int im_vec = simdi32_set(4); //IM 00000100 ^~~~~~~~ si_int /<>/src/hhutil-inl.h:588:8: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? inline simd_float simd_flog2_sum_fpow2(simd_float x1, simd_float x2, simd_float x3) { ^~~~~~~~~~ simd_hmax /<>/src/hhutil-inl.h:628:8: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? inline simd_float simd_flog2_sum_fpow2(simd_float x1, simd_float x2) { ^~~~~~~~~~ simd_hmax /<>/src/hhviterbialgorithm.cpp:84:11: error: 'simd_int' does not name a type; did you mean 'si_int'? const simd_int dg_vec = simdi32_set(5); //DG 00000101 ^~~~~~~~ si_int /<>/src/hhviterbialgorithm.cpp:85:11: error: 'simd_int' does not name a type; did you mean 'si_int'? const simd_int mi_vec = simdi32_set(6); //MI 00000110 ^~~~~~~~ si_int /<>/src/hhviterbialgorithm.cpp:86:11: error: 'simd_int' does not name a type; did you mean 'si_int'? const simd_int gd_mm_vec = simdi32_set(8); // 00001000 ^~~~~~~~ si_int /<>/src/hhviterbialgorithm.cpp:87:11: error: 'simd_int' does not name a type; did you mean 'si_int'? const simd_int im_mm_vec = simdi32_set(16);// 00010000 ^~~~~~~~ si_int /<>/src/hhviterbialgorithm.cpp:88:11: error: 'simd_int' does not name a type; did you mean 'si_int'? const simd_int dg_mm_vec = simdi32_set(32);// 00100000 ^~~~~~~~ si_int /<>/src/hhviterbialgorithm.cpp:89:11: error: 'simd_int' does not name a type; did you mean 'si_int'? const simd_int mi_mm_vec = simdi32_set(64);// 01000000 ^~~~~~~~ si_int /<>/src/hhviterbialgorithm.cpp:99:5: error: 'simd_float' was not declared in this scope simd_float * ss_score_vec = (simd_float *) ss_score; ^~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:99:5: note: suggested alternative: 'simd_hmax' simd_float * ss_score_vec = (simd_float *) ss_score; ^~~~~~~~~~ simd_hmax In file included from /<>/src/hhdatabase.h:24, from /<>/src/hhdecl.h:115, from /<>/src/hhblits.h:59, from /<>/src/hhblits.cpp:8: /<>/src/hhprefilter.h:103:61: error: 'simd_int' has not been declared const int dbseq_length, const unsigned char score_offset, simd_int* workspace); ^~~~~~~~ /<>/src/hhprefilter.h:111:3: error: 'simd_int' has not been declared simd_int *pvHLoad, ^~~~~~~~ /<>/src/hhprefilter.h:112:3: error: 'simd_int' has not been declared simd_int *pvHStore, ^~~~~~~~ /<>/src/hhprefilter.h:113:3: error: 'simd_int' has not been declared simd_int *pvE, ^~~~~~~~ /<>/src/hhviterbialgorithm.cpp:99:18: error: 'ss_score_vec' was not declared in this scope simd_float * ss_score_vec = (simd_float *) ss_score; ^~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:99:18: note: suggested alternative: 'ss_score' simd_float * ss_score_vec = (simd_float *) ss_score; ^~~~~~~~~~~~ ss_score /<>/src/hhviterbialgorithm.cpp:99:46: error: expected primary-expression before ')' token simd_float * ss_score_vec = (simd_float *) ss_score; ^ /<>/src/hhviterbialgorithm.cpp:121:11: error: 'simd_int' does not name a type; did you mean 'si_int'? const simd_int tmp_vec = simdi32_set4(0x40000000,0x00400000,0x00004000,0x00000040); ^~~~~~~~ si_int /<>/src/hhviterbialgorithm.cpp:122:11: error: 'simd_int' does not name a type; did you mean 'si_int'? const simd_int co_vec = tmp_vec; ^~~~~~~~ si_int /<>/src/hhviterbialgorithm.cpp:123:11: error: 'simd_int' does not name a type; did you mean 'si_int'? const simd_int float_min_vec = (simd_int) simdf32_set(-FLT_MAX); ^~~~~~~~ si_int /<>/src/hhviterbialgorithm.cpp:128:5: error: 'simd_int' was not declared in this scope simd_int i2_vec = simdi32_set(0); ^~~~~~~~ /<>/src/hhviterbialgorithm.cpp:128:5: note: suggested alternative: 'si_int' simd_int i2_vec = simdi32_set(0); ^~~~~~~~ si_int /<>/src/hhviterbialgorithm.cpp:129:13: error: expected ';' before 'j2_vec' simd_int j2_vec = simdi32_set(0); ^~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:130:15: error: expected ';' before 'sMM_i_j' simd_float sMM_i_j = simdf32_set(0); ^~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:131:15: error: expected ';' before 'sMI_i_j' simd_float sMI_i_j,sIM_i_j,sGD_i_j,sDG_i_j; ^~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:134:15: error: expected ';' before 'Si_vec' simd_float Si_vec; ^~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:135:15: error: expected ';' before 'sMM_i_1_j_1' simd_float sMM_i_1_j_1; ^~~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:136:15: error: expected ';' before 'sMI_i_1_j_1' simd_float sMI_i_1_j_1; ^~~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:137:15: error: expected ';' before 'sIM_i_1_j_1' simd_float sIM_i_1_j_1; ^~~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:138:15: error: expected ';' before 'sGD_i_1_j_1' simd_float sGD_i_1_j_1; ^~~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:139:15: error: expected ';' before 'sDG_i_1_j_1' simd_float sDG_i_1_j_1; ^~~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:141:15: error: expected ';' before 'score_vec' simd_float score_vec = simdf32_set(-FLT_MAX); ^~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:142:13: error: expected ';' before 'byte_result_vec' simd_int byte_result_vec = simdi32_set(0); ^~~~~~~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:148:9: error: 'sMM_DG_MI_GD_IM_vec' was not declared in this scope sMM_DG_MI_GD_IM_vec[index_pos_j + 0] = simdf32_set(-j*penalty_gap_template); ^~~~~~~~~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:148:48: error: 'simdf32_set' was not declared in this scope sMM_DG_MI_GD_IM_vec[index_pos_j + 0] = simdf32_set(-j*penalty_gap_template); ^~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:148:48: note: suggested alternative: 'sigdelset' sMM_DG_MI_GD_IM_vec[index_pos_j + 0] = simdf32_set(-j*penalty_gap_template); ^~~~~~~~~~~ sigdelset /<>/src/hhviterbialgorithm.cpp:161:9: error: 'sMM_i_1_j_1' was not declared in this scope sMM_i_1_j_1 = simdf32_set(-(i - 1) * penalty_gap_query); // initialize at (i-1,0) ^~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:161:23: error: 'simdf32_set' was not declared in this scope sMM_i_1_j_1 = simdf32_set(-(i - 1) * penalty_gap_query); // initialize at (i-1,0) ^~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:161:23: note: suggested alternative: 'sigdelset' sMM_i_1_j_1 = simdf32_set(-(i - 1) * penalty_gap_query); // initialize at (i-1,0) ^~~~~~~~~~~ sigdelset /<>/src/hhviterbialgorithm.cpp:162:9: error: 'sIM_i_1_j_1' was not declared in this scope sIM_i_1_j_1 = simdf32_set(-FLT_MAX); // initialize at (i-1,jmin-1) ^~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:163:9: error: 'sMI_i_1_j_1' was not declared in this scope sMI_i_1_j_1 = simdf32_set(-FLT_MAX); ^~~~~~~~~~~ In file included from /<>/src/hhblits.h:83, from /<>/src/hhblits.cpp:8: /<>/src/hhhmmsimd.h:21:5: error: 'simd_int' does not name a type; did you mean 'si_int'? simd_int * lengths; // length of HMMs respectively ^~~~~~~~ si_int /<>/src/hhviterbialgorithm.cpp:164:9: error: 'sDG_i_1_j_1' was not declared in this scope sDG_i_1_j_1 = simdf32_set(-FLT_MAX); ^~~~~~~~~~~ /<>/src/hhhmmsimd.h:23:5: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? simd_float * tr; // tr_m2m[i] = log2 of transition probabilities M2M ^~~~~~~~~~ simd_hmax In file included from /<>/src/hhblits.h:84, from /<>/src/hhblits.cpp:8: /<>/src/hhviterbimatrix-inl.h: In member function 'void ViterbiMatrix::setCellOff(int, int, int, bool)': /<>/src/hhviterbimatrix-inl.h:29:56: error: 'VECSIZE_FLOAT' was not declared in this scope BIT_SET(this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem],7); ^~~~~~~~~~~~~ /<>/src/hhviterbimatrix.h:16:24: note: in definition of macro 'BIT_SET' #define BIT_SET(a,b) ((a) |= (1<<(b))) ^ /<>/src/hhviterbimatrix-inl.h:32:58: error: 'VECSIZE_FLOAT' was not declared in this scope BIT_CLEAR(this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem], 7); ^~~~~~~~~~~~~ /<>/src/hhviterbimatrix.h:17:26: note: in definition of macro 'BIT_CLEAR' #define BIT_CLEAR(a,b) ((a) &= ~(1<<(b))) ^ /<>/src/hhviterbialgorithm.cpp:165:9: error: 'sGD_i_1_j_1' was not declared in this scope sGD_i_1_j_1 = simdf32_set(-FLT_MAX); ^~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:169:9: error: 'sMM_DG_MI_GD_IM_vec' was not declared in this scope sMM_DG_MI_GD_IM_vec[index_pos_i + 0] = simdf32_set(-i * penalty_gap_query); // initialize at (i,0) ^~~~~~~~~~~~~~~~~~~ /<>/src/hhviterbimatrix-inl.h: In member function 'void ViterbiMatrix::setMatIns(int, int, int, bool)': /<>/src/hhviterbimatrix-inl.h:38:56: error: 'VECSIZE_FLOAT' was not declared in this scope BIT_SET(this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem],6); ^~~~~~~~~~~~~ /<>/src/hhviterbimatrix.h:16:24: note: in definition of macro 'BIT_SET' #define BIT_SET(a,b) ((a) |= (1<<(b))) ^ /<>/src/hhviterbimatrix-inl.h:40:58: error: 'VECSIZE_FLOAT' was not declared in this scope BIT_CLEAR(this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem], 6); ^~~~~~~~~~~~~ /<>/src/hhviterbimatrix.h:17:26: note: in definition of macro 'BIT_CLEAR' #define BIT_CLEAR(a,b) ((a) &= ~(1<<(b))) ^ /<>/src/hhviterbialgorithm.cpp:182:15: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? const simd_float q_m2m = simdf32_load((float *) (q->tr + start_pos_tr_i_1 + 2)); // M2M ^~~~~~~~~~ simd_hmax /<>/src/hhviterbimatrix-inl.h: In member function 'void ViterbiMatrix::setDelGap(int, int, int, bool)': /<>/src/hhviterbimatrix-inl.h:46:56: error: 'VECSIZE_FLOAT' was not declared in this scope BIT_SET(this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem],5); ^~~~~~~~~~~~~ /<>/src/hhviterbimatrix.h:16:24: note: in definition of macro 'BIT_SET' #define BIT_SET(a,b) ((a) |= (1<<(b))) ^ /<>/src/hhviterbialgorithm.cpp:183:15: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? const simd_float q_m2d = simdf32_load((float *) (q->tr + start_pos_tr_i_1 + 3)); // M2D ^~~~~~~~~~ simd_hmax /<>/src/hhviterbimatrix-inl.h:48:58: error: 'VECSIZE_FLOAT' was not declared in this scope BIT_CLEAR(this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem], 5); ^~~~~~~~~~~~~ /<>/src/hhviterbimatrix.h:17:26: note: in definition of macro 'BIT_CLEAR' #define BIT_CLEAR(a,b) ((a) &= ~(1<<(b))) ^ /<>/src/hhviterbialgorithm.cpp:184:15: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? const simd_float q_d2m = simdf32_load((float *) (q->tr + start_pos_tr_i_1 + 4)); // D2M ^~~~~~~~~~ simd_hmax /<>/src/hhviterbimatrix-inl.h: In member function 'void ViterbiMatrix::setInsMat(int, int, int, bool)': /<>/src/hhviterbimatrix-inl.h:54:56: error: 'VECSIZE_FLOAT' was not declared in this scope BIT_SET(this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem],4); ^~~~~~~~~~~~~ /<>/src/hhviterbimatrix.h:16:24: note: in definition of macro 'BIT_SET' #define BIT_SET(a,b) ((a) |= (1<<(b))) ^ /<>/src/hhviterbialgorithm.cpp:185:15: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? const simd_float q_d2d = simdf32_load((float *) (q->tr + start_pos_tr_i_1 + 5)); // D2D ^~~~~~~~~~ simd_hmax /<>/src/hhviterbimatrix-inl.h:56:58: error: 'VECSIZE_FLOAT' was not declared in this scope BIT_CLEAR(this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem], 4); ^~~~~~~~~~~~~ /<>/src/hhviterbimatrix.h:17:26: note: in definition of macro 'BIT_CLEAR' #define BIT_CLEAR(a,b) ((a) &= ~(1<<(b))) ^ /<>/src/hhviterbialgorithm.cpp:186:15: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? const simd_float q_i2m = simdf32_load((float *) (q->tr + start_pos_tr_i_1 + 6)); // I2m ^~~~~~~~~~ simd_hmax /<>/src/hhviterbimatrix-inl.h: In member function 'void ViterbiMatrix::setGapDel(int, int, int, bool)': /<>/src/hhviterbimatrix-inl.h:62:56: error: 'VECSIZE_FLOAT' was not declared in this scope BIT_SET(this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem],3); ^~~~~~~~~~~~~ /<>/src/hhviterbimatrix.h:16:24: note: in definition of macro 'BIT_SET' #define BIT_SET(a,b) ((a) |= (1<<(b))) ^ /<>/src/hhviterbimatrix-inl.h:64:58: error: 'VECSIZE_FLOAT' was not declared in this scope BIT_CLEAR(this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem], 3); ^~~~~~~~~~~~~ /<>/src/hhviterbimatrix.h:17:26: note: in definition of macro 'BIT_CLEAR' #define BIT_CLEAR(a,b) ((a) &= ~(1<<(b))) ^ /<>/src/hhviterbialgorithm.cpp:187:15: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? const simd_float q_i2i = simdf32_load((float *) (q->tr + start_pos_tr_i)); // I2I ^~~~~~~~~~ simd_hmax /<>/src/hhviterbialgorithm.cpp:188:15: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? const simd_float q_m2i = simdf32_load((float *) (q->tr + start_pos_tr_i + 1)); // M2I ^~~~~~~~~~ simd_hmax In file included from /<>/src/hhviterbimatrix.h:86, from /<>/src/hhblits.h:84, from /<>/src/hhblits.cpp:8: /<>/src/hhviterbimatrix-inl.h: In member function 'void ViterbiMatrix::setMatMat(int, int, int, unsigned char)': /<>/src/hhviterbimatrix-inl.h:73:48: error: 'VECSIZE_FLOAT' was not declared in this scope this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem] = ^~~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:197:50: error: 'VECSIZE_FLOAT' was not declared in this scope memset(ss_score, 0, (targetLength+1)*VECSIZE_FLOAT*sizeof(float)); ^~~~~~~~~~~~~ /<>/src/hhviterbimatrix-inl.h: In member function 'bool ViterbiMatrix::getCellOff(int, int, int)': /<>/src/hhviterbimatrix-inl.h:78:74: error: 'VECSIZE_FLOAT' was not declared in this scope unsigned char vCO_MI_DG_GD_MM=this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem]; ^~~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:208:44: error: 'VECSIZE_FLOAT' was not declared in this scope for (j = 0; j <= (targetLength*VECSIZE_FLOAT); j++) // Loop through template positions j ^~~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:216:21: error: expected ';' before 'index_vec' simd_int index_vec; ^~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:217:21: error: expected ';' before 'res_gt_vec' simd_int res_gt_vec; ^~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:222:19: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? const simd_float t_m2m = simdf32_load((float *) (t->tr+start_pos_tr_j_1+2)); // M2M ^~~~~~~~~~ simd_hmax /<>/src/hhviterbimatrix-inl.h: In member function 'bool ViterbiMatrix::getMatIns(int, int, int)': /<>/src/hhviterbimatrix-inl.h:84:74: error: 'VECSIZE_FLOAT' was not declared in this scope unsigned char vCO_MI_DG_GD_MM=this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem]; ^~~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:223:19: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? const simd_float t_m2d = simdf32_load((float *) (t->tr+start_pos_tr_j_1+3)); // M2D ^~~~~~~~~~ simd_hmax /<>/src/hhviterbialgorithm.cpp:224:19: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? const simd_float t_d2m = simdf32_load((float *) (t->tr+start_pos_tr_j_1+4)); // D2M ^~~~~~~~~~ simd_hmax /<>/src/hhviterbimatrix-inl.h: In member function 'bool ViterbiMatrix::getDelGap(int, int, int)': /<>/src/hhviterbimatrix-inl.h:90:74: error: 'VECSIZE_FLOAT' was not declared in this scope unsigned char vCO_MI_DG_GD_MM=this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem]; ^~~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:225:19: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? const simd_float t_d2d = simdf32_load((float *) (t->tr+start_pos_tr_j_1+5)); // D2D ^~~~~~~~~~ simd_hmax /<>/src/hhviterbialgorithm.cpp:226:19: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? const simd_float t_i2m = simdf32_load((float *) (t->tr+start_pos_tr_j_1+6)); // I2m ^~~~~~~~~~ simd_hmax /<>/src/hhviterbialgorithm.cpp:227:19: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? const simd_float t_i2i = simdf32_load((float *) (t->tr+start_pos_tr_j)); // I2i ^~~~~~~~~~ simd_hmax /<>/src/hhviterbialgorithm.cpp:228:19: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? const simd_float t_m2i = simdf32_load((float *) (t->tr+start_pos_tr_j+1)); // M2I ^~~~~~~~~~ simd_hmax /<>/src/hhviterbialgorithm.cpp:241:23: error: expected ';' before 'mm_m2m_m2m_vec' simd_float mm_m2m_m2m_vec = simdf32_add( simdf32_add(sMM_i_1_j_1, q_m2m), t_m2m); ^~~~~~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:243:13: error: 'res_gt_vec' was not declared in this scope res_gt_vec = (simd_int)simdf32_gt(mm_m2m_m2m_vec, smin_vec); ^~~~~~~~~~ /<>/src/hhviterbimatrix-inl.h: In member function 'bool ViterbiMatrix::getInsMat(int, int, int)': /<>/src/hhviterbimatrix-inl.h:96:74: error: 'VECSIZE_FLOAT' was not declared in this scope unsigned char vCO_MI_DG_GD_MM=this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem]; ^~~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:244:13: error: 'byte_result_vec' was not declared in this scope byte_result_vec = simdi_and(res_gt_vec, mm_vec); ^~~~~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:244:54: error: 'mm_vec' was not declared in this scope byte_result_vec = simdi_and(res_gt_vec, mm_vec); ^~~~~~ /<>/src/hhviterbialgorithm.cpp:244:32: error: 'simdi_and' was not declared in this scope byte_result_vec = simdi_and(res_gt_vec, mm_vec); ^~~~~~~~~ /<>/src/hhviterbimatrix-inl.h: In member function 'bool ViterbiMatrix::getGapDel(int, int, int)': /<>/src/hhviterbimatrix-inl.h:102:74: error: 'VECSIZE_FLOAT' was not declared in this scope unsigned char vCO_MI_DG_GD_MM=this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem]; ^~~~~~~~~~~~~ /<>/src/hhviterbimatrix-inl.h: In member function 'int ViterbiMatrix::getMatMat(int, int, int)': /<>/src/hhviterbimatrix-inl.h:108:74: error: 'VECSIZE_FLOAT' was not declared in this scope unsigned char vCO_MI_DG_GD_MM=this->bCO_MI_DG_IM_GD_MM_vec[row][(col*VECSIZE_FLOAT)+elem]; ^~~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:244:32: note: suggested alternative: 'si_band' byte_result_vec = simdi_and(res_gt_vec, mm_vec); ^~~~~~~~~ si_band /<>/src/hhviterbialgorithm.cpp:245:13: error: 'sMM_i_j' was not declared in this scope sMM_i_j = simdf32_max(smin_vec, mm_m2m_m2m_vec); ^~~~~~~ In file included from /<>/src/hhviterbirunner.h:6, from /<>/src/hhblits.h:85, from /<>/src/hhblits.cpp:8: /<>/src/hhviterbi.h: At global scope: /<>/src/hhviterbi.h:22:15: error: 'VECSIZE_FLOAT' was not declared in this scope int i[VECSIZE_FLOAT]; ^~~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:245:35: error: 'smin_vec' was not declared in this scope sMM_i_j = simdf32_max(smin_vec, mm_m2m_m2m_vec); ^~~~~~~~ /<>/src/hhviterbi.h:23:15: error: 'VECSIZE_FLOAT' was not declared in this scope int j[VECSIZE_FLOAT]; ^~~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:245:35: note: suggested alternative: 'smin' sMM_i_j = simdf32_max(smin_vec, mm_m2m_m2m_vec); ^~~~~~~~ smin /<>/src/hhviterbialgorithm.cpp:245:45: error: 'mm_m2m_m2m_vec' was not declared in this scope sMM_i_j = simdf32_max(smin_vec, mm_m2m_m2m_vec); ^~~~~~~~~~~~~~ /<>/src/hhviterbi.h:24:21: error: 'VECSIZE_FLOAT' was not declared in this scope float score[VECSIZE_FLOAT]; ^~~~~~~~~~~~~ /<>/src/hhviterbi.h:100:21: error: 'VECSIZE_FLOAT' was not declared in this scope int start_i[VECSIZE_FLOAT], int start_j[VECSIZE_FLOAT]); ^~~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:245:23: error: 'simdf32_max' was not declared in this scope sMM_i_j = simdf32_max(smin_vec, mm_m2m_m2m_vec); ^~~~~~~~~~~ /<>/src/hhviterbi.h:100:35: error: expected ')' before ',' token int start_i[VECSIZE_FLOAT], int start_j[VECSIZE_FLOAT]); ^ ) /<>/src/hhviterbi.h:99:37: note: to match this '(' static BacktraceResult Backtrace(ViterbiMatrix * matrix, int elem, ^ /<>/src/hhviterbi.h:100:37: error: expected unqualified-id before 'int' int start_i[VECSIZE_FLOAT], int start_j[VECSIZE_FLOAT]); ^~~ /<>/src/hhviterbi.h:108:30: error: 'VECSIZE_FLOAT' was not declared in this scope float alignmentScore[VECSIZE_FLOAT], int ss_hmm_mode); ^~~~~~~~~~~~~ /<>/src/hhviterbi.h:108:44: error: expected ')' before ',' token float alignmentScore[VECSIZE_FLOAT], int ss_hmm_mode); ^ ) /<>/src/hhviterbialgorithm.cpp:245:23: note: suggested alternative: 'simd_hmax' sMM_i_j = simdf32_max(smin_vec, mm_m2m_m2m_vec); ^~~~~~~~~~~ simd_hmax /<>/src/hhviterbialgorithm.cpp:248:23: error: expected ';' before 'gd_m2m_d2m_vec' simd_float gd_m2m_d2m_vec = simdf32_add( simdf32_add(sGD_i_1_j_1, q_m2m), t_d2m); ^~~~~~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:251:13: error: 'index_vec' was not declared in this scope index_vec = simdi_and( res_gt_vec, gd_vec); ^~~~~~~~~ /<>/src/hhviterbi.h:106:37: note: to match this '(' BacktraceScore ScoreForBacktrace(HMMSimd* q_four, HMMSimd* t_four, int elem, ^ /<>/src/hhviterbi.h:108:46: error: expected unqualified-id before 'int' float alignmentScore[VECSIZE_FLOAT], int ss_hmm_mode); ^~~ /<>/src/hhviterbi.h:163:19: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? static inline simd_float ScalarProd20Vec(simd_float* qi, simd_float* tj) { ^~~~~~~~~~ simd_hmax /<>/src/hhviterbialgorithm.cpp:251:13: note: suggested alternative: 'index' index_vec = simdi_and( res_gt_vec, gd_vec); ^~~~~~~~~ index /<>/src/hhviterbi.h:242:12: error: 'simd_int' does not name a type; did you mean 'si_int'? inline simd_int scoreLookup30(simd_int score_matrix_vec01, ^~~~~~~~ si_int /<>/src/hhviterbialgorithm.cpp:251:55: error: 'gd_vec' was not declared in this scope index_vec = simdi_and( res_gt_vec, gd_vec); ^~~~~~ /<>/src/hhviterbialgorithm.cpp:251:55: note: suggested alternative: 'fd_set' index_vec = simdi_and( res_gt_vec, gd_vec); ^~~~~~ fd_set /<>/src/hhviterbi.h:298:5: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? simd_float * sMM_DG_MI_GD_IM_vec; // one vector for cache line optimization ^~~~~~~~~~ simd_hmax /<>/src/hhviterbialgorithm.cpp:252:32: error: 'simdi_or' was not declared in this scope byte_result_vec = simdi_or( index_vec, byte_result_vec); ^~~~~~~~ /<>/src/hhviterbialgorithm.cpp:252:32: note: suggested alternative: 'rmdir' byte_result_vec = simdi_or( index_vec, byte_result_vec); ^~~~~~~~ rmdir /<>/src/hhviterbi.h: In constructor 'Viterbi::ViterbiResult::ViterbiResult()': /<>/src/hhviterbi.h:26:35: error: 'VECSIZE_FLOAT' was not declared in this scope for(int idx = 0; idx< VECSIZE_FLOAT;idx++){ ^~~~~~~~~~~~~ /<>/src/hhviterbi.h:27:17: error: 'i' was not declared in this scope i[idx] = -1; ^ /<>/src/hhviterbialgorithm.cpp:254:44: error: 'gd_m2m_d2m_vec' was not declared in this scope sMM_i_j = simdf32_max(sMM_i_j, gd_m2m_d2m_vec); ^~~~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:258:23: error: expected ';' before 'im_m2m_d2m_vec' simd_float im_m2m_d2m_vec = simdf32_add( simdf32_add(sIM_i_1_j_1, q_i2m), t_m2m); ^~~~~~~~~~~~~~~ ; /<>/src/hhviterbi.h:28:17: error: 'j' was not declared in this scope j[idx] = -1; ^ /<>/src/hhviterbialgorithm.cpp:260:43: error: 'im_vec' was not declared in this scope MAX2(im_m2m_d2m_vec, sMM_i_j, im_vec,byte_result_vec); ^~~~~~ /<>/src/hhviterbialgorithm.cpp:19:35: note: in definition of macro 'MAX2' index_vec = simdi_and(res_gt_vec,vec3); \ ^~~~ /<>/src/hhviterbialgorithm.cpp:20:14: error: 'simdui8_max' was not declared in this scope res = simdui8_max(res,index_vec); ^~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:260:13: note: in expansion of macro 'MAX2' MAX2(im_m2m_d2m_vec, sMM_i_j, im_vec,byte_result_vec); ^~~~ /<>/src/hhviterbi.h:28:17: note: suggested alternative: 'jn' j[idx] = -1; ^ jn /<>/src/hhviterbi.h:29:17: error: 'score' was not declared in this scope score[idx] = 0.0f; ^~~~~ /<>/src/hhviterbi.h:29:17: note: suggested alternative: 'Score' score[idx] = 0.0f; ^~~~~ Score /<>/src/hhviterbialgorithm.cpp:20:14: note: suggested alternative: 'simd_hmax' res = simdui8_max(res,index_vec); ^~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:260:13: note: in expansion of macro 'MAX2' MAX2(im_m2m_d2m_vec, sMM_i_j, im_vec,byte_result_vec); ^~~~ /<>/src/hhviterbialgorithm.cpp:261:44: error: 'im_m2m_d2m_vec' was not declared in this scope sMM_i_j = simdf32_max(sMM_i_j, im_m2m_d2m_vec); ^~~~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:264:23: error: expected ';' before 'dg_m2m_d2m_vec' simd_float dg_m2m_d2m_vec = simdf32_add( simdf32_add(sDG_i_1_j_1, q_d2m), t_m2m); ^~~~~~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:266:43: error: 'dg_vec' was not declared in this scope MAX2(dg_m2m_d2m_vec, sMM_i_j, dg_vec,byte_result_vec); ^~~~~~ /<>/src/hhviterbialgorithm.cpp:19:35: note: in definition of macro 'MAX2' index_vec = simdi_and(res_gt_vec,vec3); \ ^~~~ /<>/src/hhviterbialgorithm.cpp:267:44: error: 'dg_m2m_d2m_vec' was not declared in this scope sMM_i_j = simdf32_max(sMM_i_j, dg_m2m_d2m_vec); ^~~~~~~~~~~~~~ In file included from /<>/src/hhblits.h:87, from /<>/src/hhblits.cpp:8: /<>/src/hhposteriormatrix.h: At global scope: /<>/src/hhposteriormatrix.h:14:29: error: 'VECSIZE_FLOAT' was not declared in this scope static const int VEC_SIZE = VECSIZE_FLOAT; ^~~~~~~~~~~~~ /<>/src/hhposteriormatrix.h:15:29: error: 'VECSIZE_FLOAT' was not declared in this scope static const int IDX_CORR = VECSIZE_FLOAT - 1; ^~~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:270:23: error: expected ';' before 'mi_m2m_d2m_vec' simd_float mi_m2m_d2m_vec = simdf32_add( simdf32_add(sMI_i_1_j_1, q_m2m), t_i2m); ^~~~~~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:272:43: error: 'mi_vec' was not declared in this scope MAX2(mi_m2m_d2m_vec, sMM_i_j, mi_vec, byte_result_vec); ^~~~~~ /<>/src/hhviterbialgorithm.cpp:19:35: note: in definition of macro 'MAX2' index_vec = simdi_and(res_gt_vec,vec3); \ ^~~~ In file included from /<>/src/hhposteriordecoderrunner.h:8, from /<>/src/hhblits.h:88, from /<>/src/hhblits.cpp:8: /<>/src/hhposteriordecoder.h:120:2: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? simd_float * m_p_forward; ^~~~~~~~~~ simd_hmax /<>/src/hhviterbialgorithm.cpp:273:44: error: 'mi_m2m_d2m_vec' was not declared in this scope sMM_i_j = simdf32_max(sMM_i_j, mi_m2m_d2m_vec); ^~~~~~~~~~~~~~ In file included from /<>/src/hhposteriordecoderrunner.h:8, from /<>/src/hhblits.h:88, from /<>/src/hhblits.cpp:8: /<>/src/hhposteriordecoder.h:140:19: error: 'simd_float' has not been declared void printVector(simd_float * vec); ^~~~~~~~~~ /<>/src/hhposteriordecoder.h:141:19: error: 'simd_int' has not been declared void printVector(simd_int * vec); ^~~~~~~~ /<>/src/hhposteriordecoder.h:141:7: error: 'void PosteriorDecoder::printVector(int*)' cannot be overloaded with 'void PosteriorDecoder::printVector(int*)' void printVector(simd_int * vec); ^~~~~~~~~~~ /<>/src/hhposteriordecoder.h:140:7: note: previous declaration 'void PosteriorDecoder::printVector(int*)' void printVector(simd_float * vec); ^~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:277:13: error: 'Si_vec' was not declared in this scope Si_vec = log2f4(ScalarProd20Vec((simd_float *) q->p[i],(simd_float *) t->p[j])); ^~~~~~ /<>/src/hhviterbialgorithm.cpp:277:58: error: expected primary-expression before ')' token Si_vec = log2f4(ScalarProd20Vec((simd_float *) q->p[i],(simd_float *) t->p[j])); ^ /<>/src/hhviterbialgorithm.cpp:277:81: error: expected primary-expression before ')' token Si_vec = log2f4(ScalarProd20Vec((simd_float *) q->p[i],(simd_float *) t->p[j])); ^ /<>/src/hhviterbialgorithm.cpp:277:29: error: 'ScalarProd20Vec' was not declared in this scope Si_vec = log2f4(ScalarProd20Vec((simd_float *) q->p[i],(simd_float *) t->p[j])); ^~~~~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:277:29: note: suggested alternative: 'ScalarProd20' Si_vec = log2f4(ScalarProd20Vec((simd_float *) q->p[i],(simd_float *) t->p[j])); ^~~~~~~~~~~~~~~ ScalarProd20 /<>/src/hhviterbialgorithm.cpp:277:22: error: 'log2f4' was not declared in this scope Si_vec = log2f4(ScalarProd20Vec((simd_float *) q->p[i],(simd_float *) t->p[j])); ^~~~~~ /<>/src/hhviterbialgorithm.cpp:277:22: note: suggested alternative: 'log2f64' Si_vec = log2f4(ScalarProd20Vec((simd_float *) q->p[i],(simd_float *) t->p[j])); ^~~~~~ log2f64 /<>/src/hhviterbialgorithm.cpp:279:22: error: 'simdf32_add' was not declared in this scope Si_vec = simdf32_add(ss_score_vec[j], Si_vec); ^~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:281:42: error: 'shift_vec' was not declared in this scope Si_vec = simdf32_add(Si_vec, shift_vec); ^~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:281:42: note: suggested alternative: 'shift' Si_vec = simdf32_add(Si_vec, shift_vec); ^~~~~~~~~ shift /<>/src/hhviterbialgorithm.cpp:288:19: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? const simd_float sMM_j_1 = simdf32_load((float *) (sMM_DG_MI_GD_IM_vec + index_pos_j_1 + 0)); ^~~~~~~~~~ simd_hmax /<>/src/hhviterbialgorithm.cpp:289:19: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? const simd_float sGD_j_1 = simdf32_load((float *) (sMM_DG_MI_GD_IM_vec + index_pos_j_1 + 3)); ^~~~~~~~~~ simd_hmax /<>/src/hhviterbialgorithm.cpp:290:19: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? const simd_float sIM_j_1 = simdf32_load((float *) (sMM_DG_MI_GD_IM_vec + index_pos_j_1 + 4)); ^~~~~~~~~~ simd_hmax /<>/src/hhviterbialgorithm.cpp:291:19: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? const simd_float sMM_j = simdf32_load((float *) (sMM_DG_MI_GD_IM_vec + index_pos_j + 0)); ^~~~~~~~~~ simd_hmax /<>/src/hhviterbialgorithm.cpp:292:19: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? const simd_float sDG_j = simdf32_load((float *) (sMM_DG_MI_GD_IM_vec + index_pos_j + 1)); ^~~~~~~~~~ simd_hmax /<>/src/hhviterbialgorithm.cpp:293:19: error: 'simd_float' does not name a type; did you mean 'simd_hmax'? const simd_float sMI_j = simdf32_load((float *) (sMM_DG_MI_GD_IM_vec + index_pos_j + 2)); ^~~~~~~~~~ simd_hmax /<>/src/hhviterbialgorithm.cpp:294:27: error: 'simdf32_load' was not declared in this scope sMM_i_1_j_1 = simdf32_load((float *)(sMM_DG_MI_GD_IM_vec + index_pos_j + 0)); ^~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:294:27: note: suggested alternative: 'simd_hmax' sMM_i_1_j_1 = simdf32_load((float *)(sMM_DG_MI_GD_IM_vec + index_pos_j + 0)); ^~~~~~~~~~~~ simd_hmax /<>/src/hhviterbialgorithm.cpp:307:23: error: expected ';' before 'mm_gd_vec' simd_float mm_gd_vec = simdf32_add(sMM_j_1, t_m2d); // MM->GD gap opening in query ^~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:308:23: error: expected ';' before 'gd_gd_vec' simd_float gd_gd_vec = simdf32_add(sGD_j_1, t_d2d); // GD->GD gap extension in query ^~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:310:48: error: 'gd_mm_vec' was not declared in this scope MAX2_SET_MASK(mm_gd_vec, gd_gd_vec,gd_mm_vec, byte_result_vec); ^~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:13:35: note: in definition of macro 'MAX2_SET_MASK' index_vec = simdi_and(res_gt_vec,vec3); \ ^~~~ /<>/src/hhviterbialgorithm.cpp:14:14: error: 'simdi_xor' was not declared in this scope res = simdi_xor(res,index_vec); ^~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:310:13: note: in expansion of macro 'MAX2_SET_MASK' MAX2_SET_MASK(mm_gd_vec, gd_gd_vec,gd_mm_vec, byte_result_vec); ^~~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:312:13: error: 'sGD_i_j' was not declared in this scope sGD_i_j = simdf32_max( ^~~~~~~ /<>/src/hhviterbialgorithm.cpp:313:34: error: 'mm_gd_vec' was not declared in this scope mm_gd_vec, ^~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:314:34: error: 'gd_gd_vec' was not declared in this scope gd_gd_vec ^~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:324:23: error: expected ';' before 'mm_mm_vec' simd_float mm_mm_vec = simdf32_add(simdf32_add(sMM_j_1, q_m2i), t_m2m); ^~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:325:23: error: expected ';' before 'im_im_vec' simd_float im_im_vec = simdf32_add(simdf32_add(sIM_j_1, q_i2i), t_m2m); // IM->IM gap extension in query ^~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:327:48: error: 'im_mm_vec' was not declared in this scope MAX2_SET_MASK(mm_mm_vec,im_im_vec, im_mm_vec, byte_result_vec); ^~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:13:35: note: in definition of macro 'MAX2_SET_MASK' index_vec = simdi_and(res_gt_vec,vec3); \ ^~~~ /<>/src/hhviterbialgorithm.cpp:327:48: note: suggested alternative: 'wmemmove' MAX2_SET_MASK(mm_mm_vec,im_im_vec, im_mm_vec, byte_result_vec); ^~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:13:35: note: in definition of macro 'MAX2_SET_MASK' index_vec = simdi_and(res_gt_vec,vec3); \ ^~~~ /<>/src/hhviterbialgorithm.cpp:329:13: error: 'sIM_i_j' was not declared in this scope sIM_i_j = simdf32_max( ^~~~~~~ /<>/src/hhviterbialgorithm.cpp:330:35: error: 'mm_mm_vec' was not declared in this scope mm_mm_vec, ^~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:330:35: note: suggested alternative: 'wmemmove' mm_mm_vec, ^~~~~~~~~ wmemmove /<>/src/hhviterbialgorithm.cpp:331:35: error: 'im_im_vec' was not declared in this scope im_im_vec ^~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:340:23: error: expected ';' before 'mm_dg_vec' simd_float mm_dg_vec = simdf32_add(sMM_j, q_m2d); ^~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:341:23: error: expected ';' before 'dg_dg_vec' simd_float dg_dg_vec = simdf32_add(sDG_j, q_d2d); //gap extension (DD) in query ^~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:343:48: error: 'dg_mm_vec' was not declared in this scope MAX2_SET_MASK(mm_dg_vec,dg_dg_vec, dg_mm_vec, byte_result_vec); ^~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:13:35: note: in definition of macro 'MAX2_SET_MASK' index_vec = simdi_and(res_gt_vec,vec3); \ ^~~~ /<>/src/hhviterbialgorithm.cpp:345:13: error: 'sDG_i_j' was not declared in this scope sDG_i_j = simdf32_max( mm_dg_vec ^~~~~~~ /<>/src/hhviterbialgorithm.cpp:345:36: error: 'mm_dg_vec' was not declared in this scope sDG_i_j = simdf32_max( mm_dg_vec ^~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:347:35: error: 'dg_dg_vec' was not declared in this scope dg_dg_vec ^~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:358:23: error: expected ';' before 'mm_mi_vec' simd_float mm_mi_vec = simdf32_add( simdf32_add(sMM_j, q_m2m), t_m2i); // MM->MI gap opening M2I in template ^~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:359:23: error: expected ';' before 'mi_mi_vec' simd_float mi_mi_vec = simdf32_add( simdf32_add(sMI_j, q_m2m), t_i2i); // MI->MI gap extension I2I in template ^~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:361:48: error: 'mi_mm_vec' was not declared in this scope MAX2_SET_MASK(mm_mi_vec, mi_mi_vec,mi_mm_vec, byte_result_vec); ^~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:13:35: note: in definition of macro 'MAX2_SET_MASK' index_vec = simdi_and(res_gt_vec,vec3); \ ^~~~ /<>/src/hhviterbialgorithm.cpp:361:48: note: suggested alternative: 'memmove' MAX2_SET_MASK(mm_mi_vec, mi_mi_vec,mi_mm_vec, byte_result_vec); ^~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:13:35: note: in definition of macro 'MAX2_SET_MASK' index_vec = simdi_and(res_gt_vec,vec3); \ ^~~~ /<>/src/hhviterbialgorithm.cpp:363:13: error: 'sMI_i_j' was not declared in this scope sMI_i_j = simdf32_max( ^~~~~~~ /<>/src/hhviterbialgorithm.cpp:364:35: error: 'mm_mi_vec' was not declared in this scope mm_mi_vec, ^~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:365:35: error: 'mi_mi_vec' was not declared in this scope mi_mi_vec ^~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:381:21: error: expected ';' before 'matrix_vec' simd_int matrix_vec = simdi32_set(sCO_MI_DG_IM_GD_MM_vec[j]>>1); ^~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:384:21: error: expected ';' before 'cell_off_vec' simd_int cell_off_vec = simdi_and(matrix_vec, co_vec); ^~~~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:385:21: error: expected ';' before 'res_eq_co_vec' simd_int res_eq_co_vec = simdi32_gt(co_vec, cell_off_vec ); // shift is because signed can't be checked here ^~~~~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:386:23: error: expected ';' before 'cell_off_float_min_vec' simd_float cell_off_float_min_vec = (simd_float) simdi_andnot(res_eq_co_vec, float_min_vec); // inverse ^ ~~~~~~~~~~~~~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:387:43: error: 'cell_off_float_min_vec' was not declared in this scope sMM_i_j = simdf32_add(sMM_i_j,cell_off_float_min_vec); // add the cell off vec to sMM_i_j. Set -FLT_MAX to cell off ^~~~~~~~~~~~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:396:13: error: 'simdf32_store' was not declared in this scope simdf32_store((float *)(sMM_DG_MI_GD_IM_vec+index_pos_j + 0), sMM_i_j); ^~~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:429:25: error: expected ';' before 'lookup_mask_hi' simd_int lookup_mask_hi = (simd_int) simdf32_gt(sMM_i_j,score_vec); ^~~~~~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:430:25: error: expected ';' before 'lookup_mask_lo' simd_int lookup_mask_lo = simdi_andnot(lookup_mask_hi,simdi32_set(-1)); ^~~~~~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:440:25: error: expected ';' before 'curr_pos_j' simd_int curr_pos_j = simdi32_set(j); ^~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:441:25: error: expected ';' before 'new_j_pos_hi' simd_int new_j_pos_hi = simdi_and(lookup_mask_hi,curr_pos_j); ^~~~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:442:25: error: expected ';' before 'old_j_pos_lo' simd_int old_j_pos_lo = simdi_and(lookup_mask_lo,j2_vec); ^~~~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:443:17: error: 'j2_vec' was not declared in this scope j2_vec = simdi32_add(new_j_pos_hi,old_j_pos_lo); ^~~~~~ /<>/src/hhviterbialgorithm.cpp:443:38: error: 'new_j_pos_hi' was not declared in this scope j2_vec = simdi32_add(new_j_pos_hi,old_j_pos_lo); ^~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:443:38: note: suggested alternative: 'index_pos_i' j2_vec = simdi32_add(new_j_pos_hi,old_j_pos_lo); ^~~~~~~~~~~~ index_pos_i /<>/src/hhviterbialgorithm.cpp:443:51: error: 'old_j_pos_lo' was not declared in this scope j2_vec = simdi32_add(new_j_pos_hi,old_j_pos_lo); ^~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:443:51: note: suggested alternative: 'index_pos_j' j2_vec = simdi32_add(new_j_pos_hi,old_j_pos_lo); ^~~~~~~~~~~~ index_pos_j /<>/src/hhviterbialgorithm.cpp:443:26: error: 'simdi32_add' was not declared in this scope j2_vec = simdi32_add(new_j_pos_hi,old_j_pos_lo); ^~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:444:25: error: expected ';' before 'curr_pos_i' simd_int curr_pos_i = simdi32_set(i); ^~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:445:25: error: expected ';' before 'new_i_pos_hi' simd_int new_i_pos_hi = simdi_and(lookup_mask_hi,curr_pos_i); ^~~~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:446:25: error: expected ';' before 'old_i_pos_lo' simd_int old_i_pos_lo = simdi_and(lookup_mask_lo,i2_vec); ^~~~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:447:17: error: 'i2_vec' was not declared in this scope i2_vec = simdi32_add(new_i_pos_hi,old_i_pos_lo); ^~~~~~ /<>/src/hhviterbialgorithm.cpp:447:38: error: 'new_i_pos_hi' was not declared in this scope i2_vec = simdi32_add(new_i_pos_hi,old_i_pos_lo); ^~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:447:38: note: suggested alternative: 'index_pos_i' i2_vec = simdi32_add(new_i_pos_hi,old_i_pos_lo); ^~~~~~~~~~~~ index_pos_i /<>/src/hhviterbialgorithm.cpp:447:51: error: 'old_i_pos_lo' was not declared in this scope i2_vec = simdi32_add(new_i_pos_hi,old_i_pos_lo); ^~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:447:51: note: suggested alternative: 'index_pos_j' i2_vec = simdi32_add(new_i_pos_hi,old_i_pos_lo); ^~~~~~~~~~~~ index_pos_j /<>/src/hhviterbialgorithm.cpp:449:17: error: 'score_vec' was not declared in this scope score_vec=simdf32_max(sMM_i_j,score_vec); ^~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:468:21: error: expected ';' before 'lookup_mask_hi' simd_int lookup_mask_hi = (simd_int) simdf32_gt(sMM_i_j,score_vec); ^~~~~~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:470:21: error: expected ';' before 'lookup_mask_lo' simd_int lookup_mask_lo = simdi_andnot(lookup_mask_hi,simdi32_set(-1)); ^~~~~~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:477:21: error: expected ';' before 'curr_pos_j' simd_int curr_pos_j = simdi32_set(j); ^~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:478:21: error: expected ';' before 'new_j_pos_hi' simd_int new_j_pos_hi = simdi_and(lookup_mask_hi,curr_pos_j); ^~~~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:479:21: error: expected ';' before 'old_j_pos_lo' simd_int old_j_pos_lo = simdi_and(lookup_mask_lo,j2_vec); ^~~~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:480:13: error: 'j2_vec' was not declared in this scope j2_vec = simdi32_add(new_j_pos_hi,old_j_pos_lo); ^~~~~~ /<>/src/hhviterbialgorithm.cpp:480:34: error: 'new_j_pos_hi' was not declared in this scope j2_vec = simdi32_add(new_j_pos_hi,old_j_pos_lo); ^~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:480:34: note: suggested alternative: 'index_pos_i' j2_vec = simdi32_add(new_j_pos_hi,old_j_pos_lo); ^~~~~~~~~~~~ index_pos_i /<>/src/hhviterbialgorithm.cpp:480:47: error: 'old_j_pos_lo' was not declared in this scope j2_vec = simdi32_add(new_j_pos_hi,old_j_pos_lo); ^~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:480:47: note: suggested alternative: 'index_pos_i' j2_vec = simdi32_add(new_j_pos_hi,old_j_pos_lo); ^~~~~~~~~~~~ index_pos_i /<>/src/hhviterbialgorithm.cpp:480:22: error: 'simdi32_add' was not declared in this scope j2_vec = simdi32_add(new_j_pos_hi,old_j_pos_lo); ^~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:481:21: error: expected ';' before 'curr_pos_i' simd_int curr_pos_i = simdi32_set(i); ^~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:482:21: error: expected ';' before 'new_i_pos_hi' simd_int new_i_pos_hi = simdi_and(lookup_mask_hi,curr_pos_i); ^~~~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:483:21: error: expected ';' before 'old_i_pos_lo' simd_int old_i_pos_lo = simdi_and(lookup_mask_lo,i2_vec); ^~~~~~~~~~~~~ ; /<>/src/hhviterbialgorithm.cpp:484:13: error: 'i2_vec' was not declared in this scope i2_vec = simdi32_add(new_i_pos_hi,old_i_pos_lo); ^~~~~~ /<>/src/hhviterbialgorithm.cpp:484:34: error: 'new_i_pos_hi' was not declared in this scope i2_vec = simdi32_add(new_i_pos_hi,old_i_pos_lo); ^~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:484:34: note: suggested alternative: 'index_pos_i' i2_vec = simdi32_add(new_i_pos_hi,old_i_pos_lo); ^~~~~~~~~~~~ index_pos_i /<>/src/hhviterbialgorithm.cpp:484:47: error: 'old_i_pos_lo' was not declared in this scope i2_vec = simdi32_add(new_i_pos_hi,old_i_pos_lo); ^~~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:484:47: note: suggested alternative: 'index_pos_i' i2_vec = simdi32_add(new_i_pos_hi,old_i_pos_lo); ^~~~~~~~~~~~ index_pos_i /<>/src/hhviterbialgorithm.cpp:486:13: error: 'score_vec' was not declared in this scope score_vec = simdf32_max(sMM_i_j,score_vec); ^~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:486:37: error: 'sMM_i_j' was not declared in this scope score_vec = simdf32_max(sMM_i_j,score_vec); ^~~~~~~ /<>/src/hhviterbialgorithm.cpp:486:25: error: 'simdf32_max' was not declared in this scope score_vec = simdf32_max(sMM_i_j,score_vec); ^~~~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:486:25: note: suggested alternative: 'simd_hmax' score_vec = simdf32_max(sMM_i_j,score_vec); ^~~~~~~~~~~ simd_hmax /<>/src/hhviterbialgorithm.cpp:491:17: error: 'struct Viterbi::ViterbiResult' has no member named 'score' result->score[seq_index]=((float*)&score_vec)[seq_index]; ^~~~~ /<>/src/hhviterbialgorithm.cpp:491:44: error: 'score_vec' was not declared in this scope result->score[seq_index]=((float*)&score_vec)[seq_index]; ^~~~~~~~~ /<>/src/hhviterbialgorithm.cpp:492:17: error: 'struct Viterbi::ViterbiResult' has no member named 'i' result->i[seq_index] = ((int*)&i2_vec)[seq_index]; ^ /<>/src/hhviterbialgorithm.cpp:492:40: error: 'i2_vec' was not declared in this scope result->i[seq_index] = ((int*)&i2_vec)[seq_index]; ^~~~~~ /<>/src/hhviterbialgorithm.cpp:493:17: error: 'struct Viterbi::ViterbiResult' has no member named 'j' result->j[seq_index] = ((int*)&j2_vec)[seq_index]; ^ /<>/src/hhviterbialgorithm.cpp:493:40: error: 'j2_vec' was not declared in this scope result->j[seq_index] = ((int*)&j2_vec)[seq_index]; ^~~~~~ make[4]: *** [src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/build.make:66: src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/hhviterbialgorithm.cpp.o] Error 1 make[4]: Leaving directory '/<>/mybuild' make[3]: *** [CMakeFiles/Makefile2:794: src/CMakeFiles/hhviterbialgorithm_with_celloff_and_ss.dir/all] Error 2 make[3]: *** Waiting for unfinished jobs.... [ 10%] Building CXX object src/CMakeFiles/CS_OBJECTS.dir/cs/blosum_matrix.cc.o cd "/<>/mybuild/src" && /usr/bin/c++ -DOPENMP -I"/<>/src" -I"/<>/src/cs" -I"/<>/mybuild" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fno-strict-aliasing -o CMakeFiles/CS_OBJECTS.dir/cs/blosum_matrix.cc.o -c "/<>/src/cs/blosum_matrix.cc" [ 11%] Building CXX object src/CMakeFiles/CS_OBJECTS.dir/cs/getopt_pp.cc.o cd "/<>/mybuild/src" && /usr/bin/c++ -DOPENMP -I"/<>/src" -I"/<>/src/cs" -I"/<>/mybuild" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fno-strict-aliasing -o CMakeFiles/CS_OBJECTS.dir/cs/getopt_pp.cc.o -c "/<>/src/cs/getopt_pp.cc" make[4]: *** [src/CMakeFiles/HH_OBJECTS.dir/build.make:66: src/CMakeFiles/HH_OBJECTS.dir/hhblits.cpp.o] Error 1 make[4]: Leaving directory '/<>/mybuild' make[3]: *** [CMakeFiles/Makefile2:366: src/CMakeFiles/HH_OBJECTS.dir/all] Error 2 [ 13%] Building CXX object src/CMakeFiles/CS_OBJECTS.dir/cs/log.cc.o cd "/<>/mybuild/src" && /usr/bin/c++ -DOPENMP -I"/<>/src" -I"/<>/src/cs" -I"/<>/mybuild" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fno-strict-aliasing -o CMakeFiles/CS_OBJECTS.dir/cs/log.cc.o -c "/<>/src/cs/log.cc" [ 14%] Building CXX object src/CMakeFiles/CS_OBJECTS.dir/cs/application.cc.o cd "/<>/mybuild/src" && /usr/bin/c++ -DOPENMP -I"/<>/src" -I"/<>/src/cs" -I"/<>/mybuild" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fno-strict-aliasing -o CMakeFiles/CS_OBJECTS.dir/cs/application.cc.o -c "/<>/src/cs/application.cc" In file included from /<>/src/cs/getopt_pp.cc:22: /<>/src/cs/getopt_pp.h:353:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void end_of_options() const throw(GetOptEx) { ^~~~~ /<>/src/cs/getopt_pp.h:363:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] GETOPT_INLINE GetOpt_pp& operator >> (const _Option& opt) throw(GetOptEx); ^~~~~ /<>/src/cs/getopt_pp.h:371:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const std::string& long_opt) throw(GetOptEx) { ^~~~~ /<>/src/cs/getopt_pp.h:386:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] template inline T getopt(char short_opt) throw(GetOptEx) { ^~~~~ /<>/src/cs/getopt_pp.cc:115:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const _Option& opt) throw (GetOptEx) { ^~~~~ In file included from /<>/src/cs/application.h:29, from /<>/src/cs/application.cc:21: /<>/src/cs/getopt_pp.h:353:31: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] void end_of_options() const throw(GetOptEx) { ^~~~~ /<>/src/cs/getopt_pp.h:363:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] GETOPT_INLINE GetOpt_pp& operator >> (const _Option& opt) throw(GetOptEx); ^~~~~ /<>/src/cs/getopt_pp.h:371:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] const std::string& long_opt) throw(GetOptEx) { ^~~~~ /<>/src/cs/getopt_pp.h:386:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] template inline T getopt(char short_opt) throw(GetOptEx) { ^~~~~ make[4]: Leaving directory '/<>/mybuild' [ 14%] Built target CS_OBJECTS make[3]: Leaving directory '/<>/mybuild' make[2]: *** [Makefile:166: all] Error 2 make[2]: Leaving directory '/<>/mybuild' dh_auto_build: cd mybuild && make -j4 NO_PNG=1 returned exit code 2 make[1]: *** [debian/rules:39: override_dh_auto_build] Error 2 make[1]: Leaving directory '/<>' make: *** [debian/rules:42: build] Error 2 dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2018-12-23T19:16:54Z Finished -------- +------------------------------------------------------------------------------+ | Post Failed Build Commands | +------------------------------------------------------------------------------+ schroot -d / -c sid-armel-sbuild-2174bb0d-6698-4e0a-8a11-2a0ecd7ad841 --run-session -q -u root -p -- sh -c "cd /<> && find . -type f -name core | xargs tar cf - " | cat > /home/chroots/rebuildd/build-hhsuite-armel/hhsuite_3.0~beta3+dfsg-1.dsc-core.tar; if [ ! -s /home/chroots/rebuildd/build-hhsuite-armel/hhsuite_3.0~beta3+dfsg-1.dsc-core.tar ]; then rm -f /home/chroots/rebuildd/build-hhsuite-armel/hhsuite_3.0~beta3+dfsg-1.dsc-core.tar; else gzip -9 /home/chroots/rebuildd/build-hhsuite-armel/hhsuite_3.0~beta3+dfsg-1.dsc-core.tar; fi --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tar: Cowardly refusing to create an empty archive Try 'tar --help' or 'tar --usage' for more information. I: Finished running 'schroot -d / -c sid-armel-sbuild-2174bb0d-6698-4e0a-8a11-2a0ecd7ad841 --run-session -q -u root -p -- sh -c "cd /<> && find . -type f -name core | xargs tar cf - " | cat > /home/chroots/rebuildd/build-hhsuite-armel/hhsuite_3.0~beta3+dfsg-1.dsc-core.tar; if [ ! -s /home/chroots/rebuildd/build-hhsuite-armel/hhsuite_3.0~beta3+dfsg-1.dsc-core.tar ]; then rm -f /home/chroots/rebuildd/build-hhsuite-armel/hhsuite_3.0~beta3+dfsg-1.dsc-core.tar; else gzip -9 /home/chroots/rebuildd/build-hhsuite-armel/hhsuite_3.0~beta3+dfsg-1.dsc-core.tar; fi'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Post Failed Build Commands | +------------------------------------------------------------------------------+ schroot -d / -c sid-armel-sbuild-2174bb0d-6698-4e0a-8a11-2a0ecd7ad841 --run-session -q -u root -p -- sh -c "cd /<> && find . -type f -name core | xargs tar cf - " | cat > /home/chroots/rebuildd/build-hhsuite-armel/hhsuite_3.0~beta3+dfsg-1.dsc-core.tar; if [ ! -s /home/chroots/rebuildd/build-hhsuite-armel/hhsuite_3.0~beta3+dfsg-1.dsc-core.tar ]; then rm -f /home/chroots/rebuildd/build-hhsuite-armel/hhsuite_3.0~beta3+dfsg-1.dsc-core.tar; else gzip -9 /home/chroots/rebuildd/build-hhsuite-armel/hhsuite_3.0~beta3+dfsg-1.dsc-core.tar; fi --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- tar: Cowardly refusing to create an empty archive Try 'tar --help' or 'tar --usage' for more information. I: Finished running 'schroot -d / -c sid-armel-sbuild-2174bb0d-6698-4e0a-8a11-2a0ecd7ad841 --run-session -q -u root -p -- sh -c "cd /<> && find . -type f -name core | xargs tar cf - " | cat > /home/chroots/rebuildd/build-hhsuite-armel/hhsuite_3.0~beta3+dfsg-1.dsc-core.tar; if [ ! -s /home/chroots/rebuildd/build-hhsuite-armel/hhsuite_3.0~beta3+dfsg-1.dsc-core.tar ]; then rm -f /home/chroots/rebuildd/build-hhsuite-armel/hhsuite_3.0~beta3+dfsg-1.dsc-core.tar; else gzip -9 /home/chroots/rebuildd/build-hhsuite-armel/hhsuite_3.0~beta3+dfsg-1.dsc-core.tar; fi'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armel Build Type: binary Build-Space: n/a Build-Time: 26 Distribution: sid Fail-Stage: build Host Architecture: armel Install-Time: 65 Job: /home/chroots/rebuildd/build-hhsuite-armel/hhsuite_3.0~beta3+dfsg-1.dsc Machine Architecture: arm64 Package: hhsuite Package-Time: 137 Source-Version: 3.0~beta3+dfsg-1 Space: n/a Status: attempted Version: 3.0~beta3+dfsg-1 -------------------------------------------------------------------------------- Finished at 2018-12-23T19:16:54Z Build needed 00:02:17, no disk space E: Build failure (dpkg-buildpackage died) mv: target '/chroot/rebuildd/out-hhsuite' is not a directory